RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 ZNF525Q8N782 197 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 PHF3Q92576 2039 aaKnown RBP12.97□□□□□ -0.33
PTPRF-201ENST00000359947 PRR32B1ATL7 298 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 SNAI2O43623 268 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 OR10S1Q8NGN2 331 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 TRAV41A0A0B4J266 112 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 GPX4P36969 197 aaPredicted RBP12.97□□□□□ -0.33
PTPRF-201ENST00000359947 Q5BKY6 102 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 OR10W1Q8NGF6 305 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 PAX1P15863 534 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 Q0VFX4 171 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 RALGAPA2Q2PPJ7 1873 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 SOD3P08294 240 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 CNTFRP26992 372 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 TIMP3P35625 211 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 LCNL1Q6ZST4 164 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 RNASEH2CQ8TDP1 164 aaKnown RBP12.96□□□□□ -0.33
PTPRF-201ENST00000359947 SMDT1Q9H4I9 107 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 B4DSR2 109 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 PSCAO43653 123 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 CD55P08174 381 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 OR10J3Q5JRS4 329 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 FER1L6-AS1Q8NA97 138 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 KLHL30-AS1Q8NEE0 82 aa12.96□□□□□ -0.33
PTPRF-201ENST00000359947 LEPP41159 167 aa12.96□□□□□ -0.34
PTPRF-201ENST00000359947 ZNF815PA8K554 130 aa12.96□□□□□ -0.34
PTPRF-201ENST00000359947 TMEM136Q6ZRR5 245 aa12.96□□□□□ -0.34
PTPRF-201ENST00000359947 LRTM2Q8N967 370 aa12.96□□□□□ -0.34
PTPRF-201ENST00000359947 OR1P1Q8NH06 330 aa12.96□□□□□ -0.34
PTPRF-201ENST00000359947 SSC4DQ8WTU2 575 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 NEUROG1Q92886 237 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 LOC285556D6RIA3 1793 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 NBASA2RRP1 2371 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 UPK2O00526 184 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 APOHP02749 345 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-201ENST00000359947 ATP5G3P48201 142 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 RNF125Q96EQ8 232 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 TRBV7-9A0A0J9YWB2 115 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 ASCL4Q6XD76 172 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 PAQR4Q8N4S7 273 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-201ENST00000359947 A0A087WV48 116 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 IGHV2-26A0A0B4J1V2 119 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 DANCRP0C864 163 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 CD200R1LQ6Q8B3 271 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 TMEM200BQ69YZ2 307 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 FMC1Q96HJ9 113 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 CHCHD5Q9BSY4 110 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 YPEL1O60688 119 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 IGHV3-53P01767 116 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 C12orf54Q6X4T0 127 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 C20orf204Q6ZNR8 217 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 FLVCR1-AS1Q8TAF5 88 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 YPEL2Q96QA6 119 aa12.95□□□□□ -0.34
PTPRF-201ENST00000359947 PARD6GQ9BYG4 376 aaPredicted RBP12.95□□□□□ -0.34
PTPRF-201ENST00000359947 C1QTNF9BB2RNN3 333 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 C1QTNF9P0C862 333 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 ZNF497Q6ZNH5 498 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 RCC1LQ96I51 464 aaKnown RBP12.94□□□□□ -0.34
PTPRF-201ENST00000359947 ZNF414Q96IQ9 312 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 H3BRM9 83 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 NDPQ00604 133 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 NUDT11Q96G61 164 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 IGKV1D-13A0A0B4J2D9 117 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 TSPAN13O95857 204 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 IGKV1-13P0DP09 117 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 RPL15P61313 204 aaKnown RBP12.94□□□□□ -0.34
PTPRF-201ENST00000359947 ARFGEF3Q5TH69 2177 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 ATP5IP56385 69 aaPredicted RBP12.94□□□□□ -0.34
PTPRF-201ENST00000359947 SIGLEC15Q6ZMC9 328 aa12.94□□□□□ -0.34
PTPRF-201ENST00000359947 IMMP2LQ96T52 175 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 TMEM50AO95807 157 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 OR9G9P0C7N8 305 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 C15orf32Q32M92 178 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 BPESC1Q9GZL8 116 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 TMEM250H0YL14 139 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 A0A0U1RRA0 63 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 PLSCR2Q9NRY7 297 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 A0A1B0GTI1 187 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 PYYP10082 97 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 UBE2E2Q96LR5 201 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 RTBDNQ9BSG5 229 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-201ENST00000359947 A0A1B0GUT8 65 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 LINC00862A6NCI5 91 aa12.93□□□□□ -0.34
PTPRF-201ENST00000359947 EVI2AP22794 236 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 ACTL10Q5JWF8 245 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 PLSCR4Q9NRQ2 329 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 OR11H12B2RN74 326 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 LILRA1O75019 489 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 CA7P43166 264 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 ST6GALNAC3Q8NDV1 305 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 OR11H1Q8NG94 326 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 OR11H2Q8NH07 326 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 GGNQ86UU5 652 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 TBX6O95947 436 aaPredicted RBP12.92□□□□□ -0.34
PTPRF-201ENST00000359947 NMBP08949 121 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 PUSL1Q8N0Z8 303 aaKnown RBP12.92□□□□□ -0.34
PTPRF-201ENST00000359947 C15orf61A6NNL5 157 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 HOXA5P20719 270 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 Q96MF0 132 aa12.92□□□□□ -0.34
PTPRF-201ENST00000359947 DUSP14O95147 198 aaKnown RBP12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms