RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 PRB4P10163 310 aaPredicted RBP7.25□□□□□ -1.25
USP4-202ENST00000351842 RPL12P30050 165 aaKnown RBP7.25□□□□□ -1.25
USP4-202ENST00000351842 TAS2R60P59551 318 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 AKR1C1Q04828 323 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 MRGPRG-AS1Q2M3A8 158 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 ZNF562Q6V9R5 426 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 Q8N6K4 173 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 OR5C1Q8NGR4 320 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 OR4C12Q96R67 309 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 STRAPQ9Y3F4 350 aaKnown RBP7.25□□□□□ -1.25
USP4-202ENST00000351842 IGHV3OR16-13A0A075B7E8 117 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 IGHV3-74A0A0B4J1X5 117 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 TRGV3P03979 118 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 PRSS54Q6PEW0 395 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 Q6ZSV7 163 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 OR2C3Q8N628 320 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 POMT1Q9Y6A1 747 aa7.25□□□□□ -1.25
USP4-202ENST00000351842 FBXO24O75426 580 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 GATA2P23769 480 aaPredicted RBP7.24□□□□□ -1.25
USP4-202ENST00000351842 ID3Q02535 119 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 SCGB2A2Q13296 93 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 ZFP82Q8N141 532 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 TEX29Q8N6K0 151 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 BPIFCQ8NFQ6 507 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 P2RX4Q99571 388 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 ZNF471Q9BX82 626 aaPredicted RBP7.24□□□□□ -1.25
USP4-202ENST00000351842 HSPB7Q9UBY9 170 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 FOXA2Q9Y261 457 aaPredicted RBP7.24□□□□□ -1.25
USP4-202ENST00000351842 IGHV3-49A0A0A0MS15 119 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 IGLC7A0M8Q6 106 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 DEDDO75618 318 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 DYNLT3P51808 116 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 PRCDQ00LT1 54 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 RUNX1Q01196 453 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 ARL16Q0P5N6 197 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 AKIRIN2Q53H80 203 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.24□□□□□ -1.25
USP4-202ENST00000351842 NPBQ8NG41 125 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 OR5B3Q8NH48 314 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 LYPD6BQ8NI32 183 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 SAT2Q96F10 170 aaPredicted RBP7.24□□□□□ -1.25
USP4-202ENST00000351842 NDUFA4L2Q9NRX3 87 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 FKBP11Q9NYL4 201 aa7.24□□□□□ -1.25
USP4-202ENST00000351842 TMEM218A2RU14 115 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 PITX3O75364 302 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 NDUFA3O95167 84 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 P0C879 139 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 PET100P0DJ07 73 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 SPP1P10451 314 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 HILS1P60008 231 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 RHOGP84095 191 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 NSUN5P1Q3KNT7 163 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 ACSM6Q6P461 480 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 IL34Q6ZMJ4 242 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 TMEM252Q8N6L7 170 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 SMIM8Q96KF7 97 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 OR2T8A6NH00 312 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 TEX22C9J3V5 150 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 AP4M1O00189 453 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 ZNF207O43670 478 aaKnown RBP7.23□□□□□ -1.25
USP4-202ENST00000351842 MED6O75586 246 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 RPLP1P05386 114 aaKnown RBP7.23□□□□□ -1.25
USP4-202ENST00000351842 TPT1P13693 172 aaKnown RBP7.23□□□□□ -1.25
USP4-202ENST00000351842 MFAP2P55001 183 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 PAX9P55771 341 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 Q56UQ5 140 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 FAM74A1Q5RGS3 127 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 C18orf65Q6ZTR6 163 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 BAP18Q8IXM2 172 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 NKX6-2Q9C056 277 aaPredicted RBP7.23□□□□□ -1.25
USP4-202ENST00000351842 DOK5Q9P104 306 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 FBXL7Q9UJT9 491 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 DUXBA0A1W2PPF3 345 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 PSMB11A5LHX3 300 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 E5RGE8 158 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 MT-CO2P00403 227 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 HLA-DRB1P01911 266 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 CRYGBP07316 175 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 ADCYAP1P18509 176 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 GPR183P32249 361 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 SNRPEP62304 92 aaKnown RBP7.23□□□□□ -1.25
USP4-202ENST00000351842 EWSR1Q01844 656 aaKnown RBP eCLIP7.23□□□□□ -1.25
USP4-202ENST00000351842 EBI3Q14213 229 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 C15orf32Q32M92 178 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 ASPHD1Q5U4P2 390 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 C16orf54Q6UWD8 224 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 KLHDC1Q8N7A1 406 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 NEU1Q99519 415 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 PBDC1Q9BVG4 233 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 MRPL36Q9P0J6 103 aaKnown RBP7.23□□□□□ -1.25
USP4-202ENST00000351842 FBXL17Q9UF56 701 aa7.23□□□□□ -1.25
USP4-202ENST00000351842 TAAR5O14804 337 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 TCAPO15273 167 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 EGR2P11161 476 aaPredicted RBP7.22□□□□□ -1.25
USP4-202ENST00000351842 RND2P52198 227 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 ELLP55199 621 aaPredicted RBP7.22□□□□□ -1.25
USP4-202ENST00000351842 BAXQ07812 192 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 SLC38A11Q08AI6 406 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 TMEM88Q6PEY1 159 aa7.22□□□□□ -1.25
USP4-202ENST00000351842 CLEC19AQ6UXS0 136 aa7.22□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms