RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 A0A0U1RQK1 487 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 RNF223E7ERA6 249 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 MT-CO2P00403 227 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 HSPB1P04792 205 aaKnown RBP10.61□□□□□ -0.71
HMGB1-202ENST00000339872 SRP19P09132 144 aaKnown RBP10.61□□□□□ -0.71
HMGB1-202ENST00000339872 FBP1P09467 338 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 CTRB1P17538 263 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 Q5PR19 223 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 HIST2H2BCQ6DN03 193 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 CTRB2Q6GPI1 263 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 CYP2G1PQ6ZSU1 146 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 C22orf15Q8WYQ4 148 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 CRYGCP07315 174 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 GATA3P23771 443 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 RHOBP62745 196 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 LRRC75A-AS1Q8N1F1 130 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 RASL11BQ9BPW5 248 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 SEPSECSQ9HD40 501 aaKnown RBP10.61□□□□□ -0.71
HMGB1-202ENST00000339872 PTPN13Q12923 2485 aa10.61□□□□□ -0.71
HMGB1-202ENST00000339872 CENPEQ02224 2701 aa10.6□□□□□ -0.71
HMGB1-202ENST00000339872 SNAPINO95295 136 aa10.6□□□□□ -0.71
HMGB1-202ENST00000339872 BTN1A1Q13410 526 aa10.6□□□□□ -0.71
HMGB1-202ENST00000339872 RBMS3Q6XE24 437 aaKnown RBP10.6□□□□□ -0.71
HMGB1-202ENST00000339872 CYB561D1Q8N8Q1 229 aa10.6□□□□□ -0.71
HMGB1-202ENST00000339872 SREK1IP1Q8N9Q2 155 aaPredicted RBP10.6□□□□□ -0.71
HMGB1-202ENST00000339872 THAP8Q8NA92 274 aa10.6□□□□□ -0.71
HMGB1-202ENST00000339872 VAX2Q9UIW0 290 aa10.6□□□□□ -0.71
HMGB1-202ENST00000339872 IGKV1D-37A0A075B6S9 117 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 IGHV7-81A0A0B4J1V7 117 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 TCRBV4S1A1TA0A5B7 111 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 AVPP01185 164 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 HLA-DRB1P01911 266 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 ARL14EPLP0DKL9 152 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 ZNF90Q03938 601 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 SOHLH1Q5JUK2 328 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 ASPHD1Q5U4P2 390 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 SPATA31B1PQ5VZV4 182 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 SLC35E3Q7Z769 313 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 GATAD1Q8WUU5 269 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 PSMG3-AS1Q96PY0 264 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP10.59□□□□□ -0.711e-6■■■■□ 22.6
HMGB1-202ENST00000339872 STAG3L2P0CL84 134 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 STAG3L3P0CL85 134 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 NPBWR1P48145 328 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 LOXL1Q08397 574 aaPredicted RBP10.59□□□□□ -0.71
HMGB1-202ENST00000339872 PMS2P11Q13670 270 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 FAM78BQ5VT40 261 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 TMEM219Q86XT9 240 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 MANBALQ9NQG1 85 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 SOX21Q9Y651 276 aaPredicted RBP10.59□□□□□ -0.71
HMGB1-202ENST00000339872 CSMD1Q96PZ7 3565 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 CR1P17927 2039 aa10.59□□□□□ -0.71
HMGB1-202ENST00000339872 PSMB3P49720 205 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 KLF17Q5JT82 389 aaPredicted RBP10.58□□□□□ -0.72
HMGB1-202ENST00000339872 TMEM116Q8NCL8 245 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 HSPB9Q9BQS6 159 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 TNFRSF19Q9NS68 423 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 CELSR1Q9NYQ6 3014 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 NPIPB5A8MRT5 1133 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 I3L2K1 104 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 CXorf1O96002 111 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 TGFAP01135 160 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 MEF2BQ02080 365 aaPredicted RBP10.58□□□□□ -0.72
HMGB1-202ENST00000339872 SPNS3Q6ZMD2 512 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 OR1L6Q8NGR2 347 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 SSX3Q99909 188 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 MEGF9Q9H1U4 602 aa10.58□□□□□ -0.72
HMGB1-202ENST00000339872 MAP1AP78559 2803 aaPredicted RBP10.58□□□□□ -0.72
HMGB1-202ENST00000339872 ABCA12Q86UK0 2595 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 MIR17HGQ75NE6 70 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 CLRN3Q8NCR9 226 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 DOK5Q9P104 306 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 FUT9Q9Y231 359 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 SH2D7A6NKC9 451 aaPredicted RBP10.57□□□□□ -0.72
HMGB1-202ENST00000339872 PAGE4O60829 102 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 EGR2P11161 476 aaPredicted RBP10.57□□□□□ -0.72
HMGB1-202ENST00000339872 SELENOTP62341 195 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 TMEM249Q2WGJ8 235 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 AKIRIN2Q53H80 203 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 C5orf56Q8N8D9 126 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 PIFOQ8TCI5 191 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 Q96MF0 132 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 GSX1Q9H4S2 264 aaPredicted RBP10.57□□□□□ -0.72
HMGB1-202ENST00000339872 ABCA1O95477 2261 aa10.57□□□□□ -0.72
HMGB1-202ENST00000339872 K7EIM0 57 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 TSPAN9O75954 239 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 OR5G3P0C626 314 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 TAGLN2P37802 199 aaKnown RBP10.56□□□□□ -0.72
HMGB1-202ENST00000339872 CD81P60033 236 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 UBE2G2P60604 165 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 TTC9CQ8N5M4 171 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 TMEM37Q8WXS4 190 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 RBM14Q96PK6 669 aaKnown RBP10.56□□□□□ -0.72
HMGB1-202ENST00000339872 TRGV9Q99603 122 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 C19orf24Q9BVV8 132 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 MOB4Q9Y3A3 225 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 PUS1Q9Y606 427 aaKnown RBP eCLIP10.56□□□□□ -0.72
HMGB1-202ENST00000339872 ATP6V0E1O15342 81 aa10.56□□□□□ -0.72
HMGB1-202ENST00000339872 NUPL2O15504 423 aaKnown RBP10.56□□□□□ -0.72
HMGB1-202ENST00000339872 COX7A2P2O60397 106 aa10.56□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 109.4 ms