RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 VSIRQ9H7M9 311 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 NAA60Q9H7X0 242 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 ENY2Q9NPA8 101 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 CACFD1Q9UGQ2 172 aa13.14□□□□□ -0.31
HDDC3-201ENST00000330334 GSTZ1O43708 216 aaPredicted RBP13.13□□□□□ -0.31
HDDC3-201ENST00000330334 OR5AC1P0C628 307 aa13.13□□□□□ -0.31
HDDC3-201ENST00000330334 ATF4P18848 351 aaPredicted RBP13.13□□□□□ -0.31
HDDC3-201ENST00000330334 HOXA1P49639 335 aaPredicted RBP13.13□□□□□ -0.31
HDDC3-201ENST00000330334 PAFAH1B2P68402 229 aa13.13□□□□□ -0.31
HDDC3-201ENST00000330334 TNFRSF9Q07011 255 aa13.13□□□□□ -0.31
HDDC3-201ENST00000330334 OR4C16Q8NGL9 310 aa13.13□□□□□ -0.31
HDDC3-201ENST00000330334 OR4X1Q8NH49 305 aa13.13□□□□□ -0.31
HDDC3-201ENST00000330334 RNF183Q96D59 192 aa13.13□□□□□ -0.31
HDDC3-201ENST00000330334 C6orf62Q9GZU0 229 aaPredicted RBP13.13□□□□□ -0.31
HDDC3-201ENST00000330334 CRYM-AS1A6NIL9 109 aa13.12□□□□□ -0.31
HDDC3-201ENST00000330334 JTBO76095 146 aa13.12□□□□□ -0.31
HDDC3-201ENST00000330334 IL18Q14116 193 aa13.12□□□□□ -0.31
HDDC3-201ENST00000330334 FAAP20Q6NZ36 180 aa13.12□□□□□ -0.31
HDDC3-201ENST00000330334 SELENOHQ8IZQ5 122 aaKnown RBP13.12□□□□□ -0.31
HDDC3-201ENST00000330334 RNASE11Q8TAA1 199 aaKnown RBP13.12□□□□□ -0.31
HDDC3-201ENST00000330334 SOSTQ9BQB4 213 aa13.12□□□□□ -0.31
HDDC3-201ENST00000330334 ZFAND3Q9H8U3 227 aa13.12□□□□□ -0.31
HDDC3-201ENST00000330334 MAP6D1Q9H9H5 199 aa13.12□□□□□ -0.31
HDDC3-201ENST00000330334 RSL24D1Q9UHA3 163 aaKnown RBP13.12□□□□□ -0.31
HDDC3-201ENST00000330334 PUS1Q9Y606 427 aaKnown RBP eCLIP13.12□□□□□ -0.31
HDDC3-201ENST00000330334 TMEM56-RWDD3S4R434 201 aa13.12□□□□□ -0.31
HDDC3-201ENST00000330334 TRAV2A0A0B4J234 112 aa13.11□□□□□ -0.31
HDDC3-201ENST00000330334 ANKRD20A5PA0PJZ0 165 aa13.11□□□□□ -0.31
HDDC3-201ENST00000330334 CLN5O75503 358 aa13.11□□□□□ -0.31
HDDC3-201ENST00000330334 SCGB2A1O75556 95 aa13.11□□□□□ -0.31
HDDC3-201ENST00000330334 HTR2BP41595 481 aa13.11□□□□□ -0.31
HDDC3-201ENST00000330334 LHFPL5Q8TAF8 219 aa13.11□□□□□ -0.31
HDDC3-201ENST00000330334 SCGB3A2Q96PL1 93 aa13.11□□□□□ -0.31
HDDC3-201ENST00000330334 SLIRPQ9GZT3 109 aaKnown RBP13.11□□□□□ -0.31
HDDC3-201ENST00000330334 FNDC4Q9H6D8 234 aaPredicted RBP13.11□□□□□ -0.31
HDDC3-201ENST00000330334 TRAV30A0A087WSZ9 112 aa13.1□□□□□ -0.31
HDDC3-201ENST00000330334 IGHV3-49A0A0A0MS15 119 aa13.1□□□□□ -0.31
HDDC3-201ENST00000330334 A0A1B0GU03 582 aa13.1□□□□□ -0.31
HDDC3-201ENST00000330334 OPRK1P41145 380 aa13.1□□□□□ -0.31
HDDC3-201ENST00000330334 TCF24Q7RTU0 167 aa13.1□□□□□ -0.31
HDDC3-201ENST00000330334 OR51S1Q8NGJ8 323 aa13.1□□□□□ -0.31
HDDC3-201ENST00000330334 ST8SIA2Q92186 375 aa13.1□□□□□ -0.31
HDDC3-201ENST00000330334 IL22RA2Q969J5 263 aa13.1□□□□□ -0.31
HDDC3-201ENST00000330334 TMEM231Q9H6L2 316 aa13.1□□□□□ -0.31
HDDC3-201ENST00000330334 SCP2D1Q9UJQ7 156 aa13.1□□□□□ -0.31
HDDC3-201ENST00000330334 KCNIP3Q9Y2W7 256 aa13.1□□□□□ -0.31
HDDC3-201ENST00000330334 PLECQ15149 4684 aaKnown RBP13.09□□□□□ -0.31
HDDC3-201ENST00000330334 RPS10-NUDT3A0A1W2PQS6 291 aa13.09□□□□□ -0.31
HDDC3-201ENST00000330334 A0A1W2PS18 150 aa13.09□□□□□ -0.31
HDDC3-201ENST00000330334 DFFBO76075 338 aa13.09□□□□□ -0.31
HDDC3-201ENST00000330334 NPPCP23582 126 aa13.09□□□□□ -0.31
HDDC3-201ENST00000330334 DEFB135Q30KP9 77 aa13.09□□□□□ -0.31
HDDC3-201ENST00000330334 C2orf83Q53S99 150 aa13.09□□□□□ -0.31
HDDC3-201ENST00000330334 APRG1Q8IVJ8 170 aa13.09□□□□□ -0.31
HDDC3-201ENST00000330334 LILRB2Q8N423 598 aa13.09□□□□□ -0.31
HDDC3-201ENST00000330334 RNASEH2CQ8TDP1 164 aaKnown RBP13.09□□□□□ -0.31
HDDC3-201ENST00000330334 GPR146Q96CH1 333 aa13.09□□□□□ -0.31
HDDC3-201ENST00000330334 CSTL1Q9H114 145 aa13.09□□□□□ -0.31
HDDC3-201ENST00000330334 IGHV3OR16-13A0A075B7E8 117 aa13.08□□□□□ -0.32
HDDC3-201ENST00000330334 IGHV3-74A0A0B4J1X5 117 aa13.08□□□□□ -0.32
HDDC3-201ENST00000330334 A0A0J9YWU9 116 aa13.08□□□□□ -0.32
HDDC3-201ENST00000330334 IGKV1-17P01599 117 aa13.08□□□□□ -0.32
HDDC3-201ENST00000330334 APOHP02749 345 aaPredicted RBP13.08□□□□□ -0.32
HDDC3-201ENST00000330334 RPL35AP18077 110 aaKnown RBP13.08□□□□□ -0.32
HDDC3-201ENST00000330334 CRYBB3P26998 211 aa13.08□□□□□ -0.32
HDDC3-201ENST00000330334 TNFSF8P32971 234 aa13.08□□□□□ -0.32
HDDC3-201ENST00000330334 MLANAQ16655 118 aa13.08□□□□□ -0.32
HDDC3-201ENST00000330334 TMEM268Q5VZI3 342 aa13.08□□□□□ -0.32
HDDC3-201ENST00000330334 LYG2Q86SG7 212 aa13.08□□□□□ -0.32
HDDC3-201ENST00000330334 MS4A6AQ9H2W1 248 aa13.08□□□□□ -0.32
HDDC3-201ENST00000330334 HEYLQ9NQ87 328 aaPredicted RBP13.08□□□□□ -0.32
HDDC3-201ENST00000330334 MRPL36Q9P0J6 103 aaKnown RBP13.08□□□□□ -0.32
HDDC3-201ENST00000330334 CACNG5Q9UF02 275 aa13.08□□□□□ -0.32
HDDC3-201ENST00000330334 FABP12A6NFH5 140 aa13.07□□□□□ -0.32
HDDC3-201ENST00000330334 H3BMQ9 156 aa13.07□□□□□ -0.32
HDDC3-201ENST00000330334 NOL3O60936 208 aaKnown RBP13.07□□□□□ -0.32
HDDC3-201ENST00000330334 SLC25A4P12235 298 aa13.07□□□□□ -0.32
HDDC3-201ENST00000330334 TFPI2P48307 235 aa13.07□□□□□ -0.32
HDDC3-201ENST00000330334 NMSQ5H8A3 153 aa13.07□□□□□ -0.32
HDDC3-201ENST00000330334 NOXA1Q86UR1 476 aa13.07□□□□□ -0.32
HDDC3-201ENST00000330334 GBGT1Q8N5D6 347 aa13.07□□□□□ -0.32
HDDC3-201ENST00000330334 GATAD1Q8WUU5 269 aa13.07□□□□□ -0.32
HDDC3-201ENST00000330334 METTL26Q96S19 204 aa13.07□□□□□ -0.32
HDDC3-201ENST00000330334 IGKV3-7A0A075B6H7 116 aa13.06□□□□□ -0.32
HDDC3-201ENST00000330334 MPTX1A8MV57 137 aa13.06□□□□□ -0.32
HDDC3-201ENST00000330334 DNASE2O00115 360 aaPredicted RBP13.06□□□□□ -0.32
HDDC3-201ENST00000330334 TMEM187Q14656 261 aa13.06□□□□□ -0.32
HDDC3-201ENST00000330334 TMEM217Q8N7C4 229 aa13.06□□□□□ -0.32
HDDC3-201ENST00000330334 TMEM230Q96A57 120 aa13.06□□□□□ -0.32
HDDC3-201ENST00000330334 PIGBOS1A0A0B4J2F0 54 aa13.05□□□□□ -0.32
HDDC3-201ENST00000330334 SULT1A3P0DMM9 295 aa13.05□□□□□ -0.32
HDDC3-201ENST00000330334 SULT1A4P0DMN0 295 aa13.05□□□□□ -0.32
HDDC3-201ENST00000330334 YPEL3P61236 119 aaPredicted RBP13.05□□□□□ -0.32
HDDC3-201ENST00000330334 ZNF124Q15973 351 aa13.05□□□□□ -0.32
HDDC3-201ENST00000330334 ETFRF1Q6IPR1 90 aa13.05□□□□□ -0.32
HDDC3-201ENST00000330334 PRSS54Q6PEW0 395 aa13.05□□□□□ -0.32
HDDC3-201ENST00000330334 SLC24A4Q8NFF2 622 aa13.05□□□□□ -0.32
HDDC3-201ENST00000330334 OR1S2Q8NGQ3 325 aa13.05□□□□□ -0.32
HDDC3-201ENST00000330334 A0A0B4J2A0 478 aa13.04□□□□□ -0.32
HDDC3-201ENST00000330334 NUPR2A6NF83 97 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 87.3 ms