RNA–Protein interactions for RNA: ENST00000273062.6

CTDSP1-201, Transcript of CTD small phosphatase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTDSP1, Length 2,638 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSP1-201ENST00000273062 C5orf30Q96GV9 206 aa12.9□□□□□ -0.35
CTDSP1-201ENST00000273062 C1orf159Q96HA4 380 aa12.9□□□□□ -0.35
CTDSP1-201ENST00000273062 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 ACTL6BO94805 426 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 ZNF883P0CG24 379 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 CA6P23280 308 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 BRWD1-AS2P59051 145 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 C1QTNF5Q9BXJ0 243 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 MS4A6AQ9H2W1 248 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 ZNF716A6NP11 495 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 TSPAN13O95857 204 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 OPRK1P41145 380 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 FGF12P61328 243 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 PLA2G2CQ5R387 149 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM214BQ7L5A3 538 aa12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 WIPF2Q8TF74 440 aaPredicted RBP12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 SPAG8Q99932 426 aaPredicted RBP12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 SPANXB1Q9NS25 103 aaPredicted RBP12.89□□□□□ -0.35
CTDSP1-201ENST00000273062 TRAV24A0A0B4J272 114 aa12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 SYNGR1O43759 233 aa12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 MT-CO3P00414 261 aa12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 SRYQ05066 204 aa12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 ZNF808Q8N4W9 903 aaPredicted RBP12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 GGTLC3B5MD39 225 aa12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 FABP2P12104 132 aa12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 GUSBP1Q15486 140 aa12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 MTURNQ8N3F0 131 aa12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 FGFBP3Q8TAT2 258 aa12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 LINC00470Q9BZP3 86 aa12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 MED13Q9UHV7 2174 aa12.88□□□□□ -0.35
CTDSP1-201ENST00000273062 PIGBOS1A0A0B4J2F0 54 aa12.87□□□□□ -0.35
CTDSP1-201ENST00000273062 OR2J3O76001 311 aa12.87□□□□□ -0.35
CTDSP1-201ENST00000273062 TRAT1Q6PIZ9 186 aa12.87□□□□□ -0.35
CTDSP1-201ENST00000273062 MIR17HGQ75NE6 70 aa12.87□□□□□ -0.35
CTDSP1-201ENST00000273062 IGF2BP2-AS1Q96M15 143 aa12.87□□□□□ -0.35
CTDSP1-201ENST00000273062 GCM1Q9NP62 436 aa12.87□□□□□ -0.35
CTDSP1-201ENST00000273062 ZNF257Q9Y2Q1 563 aa12.87□□□□□ -0.35
CTDSP1-201ENST00000273062 FOXI2Q6ZQN5 318 aa12.87□□□□□ -0.35
CTDSP1-201ENST00000273062 CACNA1HO95180 2353 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 C17orf98A8MV24 154 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 PSG5Q15238 335 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 CR1LQ2VPA4 569 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 ATP1A1-AS1Q5TC04 95 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 SAMD5Q5TGI4 173 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 MAP1LC3CQ9BXW4 147 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 BOKQ9UMX3 212 aaPredicted RBP12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 KMT2EQ8IZD2 1858 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM27BQ5VT28 67 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 AAED1Q7RTV5 226 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 ARPC1AQ92747 370 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 SNRNP40Q96DI7 357 aaKnown RBP12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 KCNIP1Q9NZI2 227 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 PSG8Q9UQ74 426 aa12.86□□□□□ -0.35
CTDSP1-201ENST00000273062 CFAP47Q6ZTR5 3102 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 HIGD1CA8MV81 97 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 K7ERJ3 54 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 ZNF32P17041 273 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 ETDBQ3ZM63 59 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 RNF183Q96D59 192 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 URB1O60287 2271 aaKnown RBP12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A10PA6NDY2 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A18PA6NE21 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A16PA6NEW6 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A20PA6NIJ5 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A8PA6NJQ4 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A7PA6NKC0 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A22PA8MWA6 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A12PA8MX19 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A5PA8MXJ8 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A23PA8MXZ1 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 SLC25A17O43808 307 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A15PP0C7V4 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A13PP0C7W8 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A14PP0C7W9 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 FAM90A24PP0C7X0 464 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 LINC01545Q5VT33 79 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 C9orf135Q5VTT2 229 aa12.85□□□□□ -0.35
CTDSP1-201ENST00000273062 AREGP15514 252 aa12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 HES3Q5TGS1 186 aa12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 MPC1Q9Y5U8 109 aa12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 C5orf49A4QMS7 147 aa12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 K7EMI3 77 aa12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 MAGEA5P43359 124 aa12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 HERV-K104P63124 156 aa12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 TRIB1Q96RU8 372 aa12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 B4GALT7Q9UBV7 327 aa12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 INSIG2Q9Y5U4 225 aa12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 FREM1Q5H8C1 2179 aa12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 EP300Q09472 2414 aaPredicted RBP12.84□□□□□ -0.35
CTDSP1-201ENST00000273062 BRI3O95415 125 aa12.83□□□□□ -0.36
CTDSP1-201ENST00000273062 OR1C1Q15619 314 aa12.83□□□□□ -0.36
CTDSP1-201ENST00000273062 C3AR1Q16581 482 aa12.83□□□□□ -0.36
CTDSP1-201ENST00000273062 FA2HQ7L5A8 372 aa12.83□□□□□ -0.36
CTDSP1-201ENST00000273062 PIP4P2Q8N4L2 257 aa12.83□□□□□ -0.36
CTDSP1-201ENST00000273062 ZNF503Q96F45 646 aa12.83□□□□□ -0.36
CTDSP1-201ENST00000273062 ABHD17AQ96GS6 310 aa12.83□□□□□ -0.36
CTDSP1-201ENST00000273062 FAM186AA6NE01 2351 aa12.83□□□□□ -0.36
CTDSP1-201ENST00000273062 PRRC2CQ9Y520 2896 aaKnown RBP12.83□□□□□ -0.36
CTDSP1-201ENST00000273062 ABHD17BQ5VST6 288 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 93.2 ms