RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 SLC17A3O00476 420 aa15.97■□□□□ 0.15
UPF1-201ENST00000262803 TDGF1P13385 188 aa15.97■□□□□ 0.15
UPF1-201ENST00000262803 C18orf12Q96KH6 178 aa15.97■□□□□ 0.15
UPF1-201ENST00000262803 MST1P26927 711 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 RNASE4P34096 147 aaKnown RBP15.96■□□□□ 0.15
UPF1-201ENST00000262803 RNF125Q96EQ8 232 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 ATP5G3P48201 142 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 C21orf62-AS1Q17RA5 79 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 OR10J3Q5JRS4 329 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 SPOCK3Q9BQ16 436 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 ST20Q9HBF5 79 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 SLC25A20O43772 301 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 MPZP25189 248 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 CDKN1AP38936 164 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 A0A0G2JMZ2 1700 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 LRRC37A2A6NM11 1700 aa15.96■□□□□ 0.15
UPF1-201ENST00000262803 PRCDQ00LT1 54 aa15.96■□□□□ 0.14
UPF1-201ENST00000262803 MORN2Q502X0 79 aa15.96■□□□□ 0.14
UPF1-201ENST00000262803 SCO2A0A1W2PP80 73 aa15.95■□□□□ 0.14
UPF1-201ENST00000262803 FOXA3P55318 350 aaPredicted RBP15.95■□□□□ 0.14
UPF1-201ENST00000262803 PEF1Q9UBV8 284 aaKnown RBP15.95■□□□□ 0.14
UPF1-201ENST00000262803 IFI27P40305 119 aaPredicted RBP15.95■□□□□ 0.14
UPF1-201ENST00000262803 MESP1Q9BRJ9 268 aa15.95■□□□□ 0.14
UPF1-201ENST00000262803 ARHGEF17Q96PE2 2063 aaPredicted RBP15.95■□□□□ 0.14
UPF1-201ENST00000262803 DOCK6Q96HP0 2047 aa15.95■□□□□ 0.14
UPF1-201ENST00000262803 MALP21145 153 aa15.95■□□□□ 0.14
UPF1-201ENST00000262803 TMEM42Q69YG0 159 aa15.95■□□□□ 0.14
UPF1-201ENST00000262803 PLSCR4Q9NRQ2 329 aa15.95■□□□□ 0.14
UPF1-201ENST00000262803 A0A1W2PRE2 83 aa15.95■□□□□ 0.14
UPF1-201ENST00000262803 TMEM160Q9NX00 188 aa15.95■□□□□ 0.14
UPF1-201ENST00000262803 MED12Q93074 2177 aa15.95■□□□□ 0.14
UPF1-201ENST00000262803 FREM3P0C091 2139 aa15.95■□□□□ 0.14
UPF1-201ENST00000262803 IGHV3-23P01764 117 aa15.94■□□□□ 0.14
UPF1-201ENST00000262803 CD59P13987 128 aa15.94■□□□□ 0.14
UPF1-201ENST00000262803 TTC32Q5I0X7 151 aa15.94■□□□□ 0.14
UPF1-201ENST00000262803 IGHV1-18A0A0C4DH31 117 aa15.94■□□□□ 0.14
UPF1-201ENST00000262803 F8VVB4 439 aa15.94■□□□□ 0.14
UPF1-201ENST00000262803 F8VWA3 439 aa15.94■□□□□ 0.14
UPF1-201ENST00000262803 KIR3DL3Q8N743 410 aa15.94■□□□□ 0.14
UPF1-201ENST00000262803 A0A0A6YYD4 124 aa15.94■□□□□ 0.14
UPF1-201ENST00000262803 APOHP02749 345 aaPredicted RBP15.94■□□□□ 0.14
UPF1-201ENST00000262803 CRPP02741 224 aa15.93■□□□□ 0.14
UPF1-201ENST00000262803 SRSF3P84103 164 aaKnown RBP15.93■□□□□ 0.14
UPF1-201ENST00000262803 SPSB3Q6PJ21 355 aa15.93■□□□□ 0.14
UPF1-201ENST00000262803 IGKV1D-8A0A087WSZ0 117 aa15.93■□□□□ 0.14
UPF1-201ENST00000262803 DPRXA6NFQ7 191 aa15.93■□□□□ 0.14
UPF1-201ENST00000262803 RHOGP84095 191 aa15.93■□□□□ 0.14
UPF1-201ENST00000262803 ORMDL2Q53FV1 153 aa15.93■□□□□ 0.14
UPF1-201ENST00000262803 IMMP2LQ96T52 175 aa15.93■□□□□ 0.14
UPF1-201ENST00000262803 LOC105371267A0A1B0GV96 52 aa15.92■□□□□ 0.14
UPF1-201ENST00000262803 F2Z2F3 143 aa15.92■□□□□ 0.14
UPF1-201ENST00000262803 CCL20P78556 96 aa15.92■□□□□ 0.14
UPF1-201ENST00000262803 SPTBN1Q01082 2364 aaKnown RBP15.92■□□□□ 0.14
UPF1-201ENST00000262803 NXT2Q9NPJ8 142 aaKnown RBP15.92■□□□□ 0.14
UPF1-201ENST00000262803 SLC25A16P16260 332 aa15.92■□□□□ 0.14
UPF1-201ENST00000262803 IGHV3OR16-13A0A075B7E8 117 aa15.92■□□□□ 0.14
UPF1-201ENST00000262803 IGHV3-74A0A0B4J1X5 117 aa15.92■□□□□ 0.14
UPF1-201ENST00000262803 M0R1W7 72 aa15.92■□□□□ 0.14
UPF1-201ENST00000262803 B4DSR2 109 aa15.92■□□□□ 0.14
UPF1-201ENST00000262803 OR5AN1Q8NGI8 311 aa15.92■□□□□ 0.14
UPF1-201ENST00000262803 DEPPQ9NTK1 212 aa15.92■□□□□ 0.14
UPF1-201ENST00000262803 ZNF688P0C7X2 276 aa15.91■□□□□ 0.14
UPF1-201ENST00000262803 VGLL1Q99990 258 aa15.91■□□□□ 0.14
UPF1-201ENST00000262803 FGF16O43320 207 aa15.91■□□□□ 0.14
UPF1-201ENST00000262803 PAX8Q06710 450 aa15.91■□□□□ 0.14
UPF1-201ENST00000262803 MIR17HGQ75NE6 70 aa15.91■□□□□ 0.14
UPF1-201ENST00000262803 TRAV41A0A0B4J266 112 aa15.91■□□□□ 0.14
UPF1-201ENST00000262803 GATA2P23769 480 aaPredicted RBP15.91■□□□□ 0.14
UPF1-201ENST00000262803 NCOR1O75376 2440 aa15.9■□□□□ 0.14
UPF1-201ENST00000262803 LINC00587B1AMM8 73 aa15.9■□□□□ 0.14
UPF1-201ENST00000262803 BEND2Q8NDZ0 799 aa15.9■□□□□ 0.14
UPF1-201ENST00000262803 OSTCQ9NRP0 149 aa15.9■□□□□ 0.14
UPF1-201ENST00000262803 RPL23P62829 140 aaKnown RBP15.9■□□□□ 0.14
UPF1-201ENST00000262803 ID3Q02535 119 aa15.9■□□□□ 0.14
UPF1-201ENST00000262803 IGHV3-66A0A0C4DH42 116 aa15.9■□□□□ 0.14
UPF1-201ENST00000262803 IGHV1-46P01743 117 aa15.9■□□□□ 0.14
UPF1-201ENST00000262803 SRSF1Q07955 248 aaKnown RBP eCLIP15.9■□□□□ 0.144e-11■■□□□ 13.4
UPF1-201ENST00000262803 SPRR3Q9UBC9 169 aa15.9■□□□□ 0.14
UPF1-201ENST00000262803 EFNA2O43921 213 aa15.9■□□□□ 0.14
UPF1-201ENST00000262803 CD7P09564 240 aa15.9■□□□□ 0.14
UPF1-201ENST00000262803 MRPL16Q9NX20 251 aaKnown RBP15.9■□□□□ 0.14
UPF1-201ENST00000262803 TRBV7-9A0A0J9YWB2 115 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 CCL3L1P16619 93 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 ST6GALNAC3Q8NDV1 305 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 FOXC2Q99958 501 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 F11RQ9Y624 299 aaKnown RBP15.89■□□□□ 0.13
UPF1-201ENST00000262803 S4R3C0 116 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 TMEM50AO95807 157 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 A0A1B0GV90 55 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 TBL2Q9Y4P3 447 aaKnown RBP15.89■□□□□ 0.13
UPF1-201ENST00000262803 SCN8AQ9UQD0 1980 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 IGHV3-49A0A0A0MS15 119 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 TRGV4A0A0C4DH28 118 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 LILRA1O75019 489 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 IGHV3-11P01762 117 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 PRADC1Q9BSG0 188 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 EPDR1Q9UM22 224 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 CYSLTR1Q9Y271 337 aa15.89■□□□□ 0.13
UPF1-201ENST00000262803 EMP1P54849 157 aa15.88■□□□□ 0.13
UPF1-201ENST00000262803 TYMSP04818 313 aa15.88■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms