RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CFHR3Q02985 330 aa8.43□□□□□ -1.06
SS18-213ENST00000579640 EXOSC2Q13868 293 aaKnown RBP8.43□□□□□ -1.06
SS18-213ENST00000579640 SLC25A24Q6NUK1 477 aa8.43□□□□□ -1.06
SS18-213ENST00000579640 OR10P1Q8NGE3 313 aa8.43□□□□□ -1.06
SS18-213ENST00000579640 PINX1Q96BK5 328 aaKnown RBP8.43□□□□□ -1.06
SS18-213ENST00000579640 NOL4LQ96MY1 436 aaPredicted RBP8.43□□□□□ -1.06
SS18-213ENST00000579640 LINC00527Q9UJ94 153 aa8.43□□□□□ -1.06
SS18-213ENST00000579640 IGLV11-55A0A075B6I3 123 aa8.42□□□□□ -1.06
SS18-213ENST00000579640 RPS10-NUDT3A0A1W2PQS6 291 aa8.42□□□□□ -1.06
SS18-213ENST00000579640 TMEM89A2RUT3 159 aa8.42□□□□□ -1.06
SS18-213ENST00000579640 S100A11P31949 105 aa8.42□□□□□ -1.06
SS18-213ENST00000579640 EIF2B2P49770 351 aaKnown RBP8.42□□□□□ -1.06
SS18-213ENST00000579640 ATP6V1FQ16864 119 aa8.42□□□□□ -1.06
SS18-213ENST00000579640 TMEM95Q3KNT9 176 aa8.42□□□□□ -1.06
SS18-213ENST00000579640 ETFRF1Q6IPR1 90 aa8.42□□□□□ -1.06
SS18-213ENST00000579640 KCNRGQ8N5I3 272 aa8.42□□□□□ -1.06
SS18-213ENST00000579640 GGACTQ9BVM4 153 aa8.42□□□□□ -1.06
SS18-213ENST00000579640 SERTAD4Q9NUC0 356 aa8.42□□□□□ -1.06
SS18-213ENST00000579640 BOLA2-SMG1P6H3BVE0 249 aa8.41□□□□□ -1.06
SS18-213ENST00000579640 CST7O76096 145 aa8.41□□□□□ -1.06
SS18-213ENST00000579640 C4BPBP20851 252 aa8.41□□□□□ -1.06
SS18-213ENST00000579640 GPX4P36969 197 aaPredicted RBP8.41□□□□□ -1.06
SS18-213ENST00000579640 MFAP2P55001 183 aa8.41□□□□□ -1.06
SS18-213ENST00000579640 NHLH2Q02577 135 aa8.41□□□□□ -1.06
SS18-213ENST00000579640 OR8G2PQ6IF36 304 aa8.41□□□□□ -1.06
SS18-213ENST00000579640 OR1S2Q8NGQ3 325 aa8.41□□□□□ -1.06
SS18-213ENST00000579640 OR4F5Q8NH21 305 aa8.41□□□□□ -1.06
SS18-213ENST00000579640 CACNG8Q8WXS5 425 aa8.41□□□□□ -1.06
SS18-213ENST00000579640 FANCD2OSQ96PS1 177 aa8.41□□□□□ -1.06
SS18-213ENST00000579640 SLA2Q9H6Q3 261 aa8.41□□□□□ -1.06
SS18-213ENST00000579640 TRBV9A0A0B4J1U6 114 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 PSMB11A5LHX3 300 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 PRSS46E5RG02 174 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 FNDC10F2Z333 226 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 TAAR5O14804 337 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 SOX15O60248 233 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 DFFBO76075 338 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 IGLV1-40P01703 118 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 IGHG4P01861 327 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 CXCL2P19875 107 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 AP2S1P53680 142 aaPredicted RBP8.4□□□□□ -1.06
SS18-213ENST00000579640 DLK1P80370 383 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 CD69Q07108 199 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 SLC38A11Q08AI6 406 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 LGALSLQ3ZCW2 172 aaPredicted RBP8.4□□□□□ -1.06
SS18-213ENST00000579640 C19orf35Q6ZS72 473 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 HAPLN4Q86UW8 402 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 LILRB2Q8N423 598 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 C9orf62Q8N4C0 152 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 COMMD1Q8N668 190 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 TMEM217Q8N7C4 229 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 OR5C1Q8NGR4 320 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 MISP3Q96FF7 219 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 ZNF355PQ9NSJ1 428 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 DMRT1Q9Y5R6 373 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 C2CD3Q4AC94 2353 aa8.4□□□□□ -1.06
SS18-213ENST00000579640 FAM223BA6NKX1 122 aa8.4□□□□□ -1.07
SS18-213ENST00000579640 ELANEP08246 267 aa8.4□□□□□ -1.07
SS18-213ENST00000579640 OPRK1P41145 380 aa8.4□□□□□ -1.07
SS18-213ENST00000579640 ARL16Q0P5N6 197 aa8.4□□□□□ -1.07
SS18-213ENST00000579640 TEX38Q6PEX7 206 aa8.4□□□□□ -1.07
SS18-213ENST00000579640 TMUB2Q71RG4 321 aa8.4□□□□□ -1.07
SS18-213ENST00000579640 CENPVQ7Z7K6 275 aaPredicted RBP8.4□□□□□ -1.07
SS18-213ENST00000579640 FAM223AQ8IWN6 122 aa8.4□□□□□ -1.07
SS18-213ENST00000579640 NECAP1Q8NC96 275 aa8.4□□□□□ -1.07
SS18-213ENST00000579640 A0A1B0GUS0 222 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 KANTRA0A1W2PQU2 76 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 I3L2K1 104 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 OR2J3O76001 311 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 MT-CO2P00403 227 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 PRH1P02810 166 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 NKX2-5P52952 324 aaPredicted RBP8.39□□□□□ -1.07
SS18-213ENST00000579640 FOXE3Q13461 319 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 SLC16A13Q7RTY0 426 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 LINC01006Q8NI28 216 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 VN1R17PQ8TDU5 208 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 USMG5Q96IX5 58 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 SLC35E1Q96K37 410 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 ATP5SQ99766 215 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 ARPC5LQ9BPX5 153 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 TMEM147Q9BVK8 224 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 ARL6Q9H0F7 186 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 FBXL17Q9UF56 701 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 FBXL7Q9UJT9 491 aa8.39□□□□□ -1.07
SS18-213ENST00000579640 SETD2Q9BYW2 2564 aaPredicted RBP8.39□□□□□ -1.07
SS18-213ENST00000579640 K7EIM0 57 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 BCL2L11O43521 198 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 TRGV3P03979 118 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 PF4V1P10720 104 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 PSMB8P28062 276 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 RIPPLY3P57055 190 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 RHOGP84095 191 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 ZNF266Q14584 549 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 VWC2Q2TAL6 325 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 LAMTOR1Q6IAA8 161 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 BSCL2Q96G97 398 aaPredicted RBP8.38□□□□□ -1.07
SS18-213ENST00000579640 CXorf58Q96LI9 332 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 SMIM3Q9BZL3 60 aa8.38□□□□□ -1.07
SS18-213ENST00000579640 FNDC4Q9H6D8 234 aaPredicted RBP8.38□□□□□ -1.07
SS18-213ENST00000579640 UQCC1Q9NVA1 299 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 96.4 ms