RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 CORTO00230 105 aa10.79□□□□□ -0.68
CCDC40-209ENST00000573474 RGS13O14921 159 aa10.79□□□□□ -0.68
CCDC40-209ENST00000573474 ATP6V0E1O15342 81 aa10.79□□□□□ -0.68
CCDC40-209ENST00000573474 FBXO24O75426 580 aa10.79□□□□□ -0.68
CCDC40-209ENST00000573474 IGHG2P01859 326 aa10.79□□□□□ -0.68
CCDC40-209ENST00000573474 DEFA4P12838 97 aa10.79□□□□□ -0.68
CCDC40-209ENST00000573474 CRIP2P52943 208 aaPredicted RBP10.79□□□□□ -0.68
CCDC40-209ENST00000573474 AKIRIN2Q53H80 203 aa10.79□□□□□ -0.68
CCDC40-209ENST00000573474 EIF5AL1Q6IS14 154 aaKnown RBP10.79□□□□□ -0.68
CCDC40-209ENST00000573474 CACNG8Q8WXS5 425 aa10.79□□□□□ -0.68
CCDC40-209ENST00000573474 CDC42EP3Q9UKI2 254 aa10.79□□□□□ -0.68
CCDC40-209ENST00000573474 CYB5BO43169 146 aa10.78□□□□□ -0.68
CCDC40-209ENST00000573474 SRD5A1P18405 259 aa10.78□□□□□ -0.68
CCDC40-209ENST00000573474 MFAP2P55001 183 aa10.78□□□□□ -0.68
CCDC40-209ENST00000573474 BLCAPP62952 87 aa10.78□□□□□ -0.68
CCDC40-209ENST00000573474 CD69Q07108 199 aa10.78□□□□□ -0.68
CCDC40-209ENST00000573474 EXOSC2Q13868 293 aaKnown RBP10.78□□□□□ -0.68
CCDC40-209ENST00000573474 UNQ5815/PRO19632Q6UWF5 114 aa10.78□□□□□ -0.68
CCDC40-209ENST00000573474 C19orf35Q6ZS72 473 aa10.78□□□□□ -0.68
CCDC40-209ENST00000573474 SLC35E3Q7Z769 313 aa10.78□□□□□ -0.68
CCDC40-209ENST00000573474 HSD17B11Q8NBQ5 300 aa10.78□□□□□ -0.68
CCDC40-209ENST00000573474 FAM110DQ8TAY7 271 aaPredicted RBP10.78□□□□□ -0.68
CCDC40-209ENST00000573474 GNPNAT1Q96EK6 184 aaPredicted RBP10.78□□□□□ -0.68
CCDC40-209ENST00000573474 MISP3Q96FF7 219 aa10.78□□□□□ -0.68
CCDC40-209ENST00000573474 UBQLN2Q9UHD9 624 aa10.78□□□□□ -0.68
CCDC40-209ENST00000573474 UBE2L5PA0A1B0GUS4 154 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 RPS10-NUDT3A0A1W2PQS6 291 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 SMCO3A2RU48 225 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 IGF1P05019 195 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 MDKP21741 143 aaPredicted RBP10.77□□□□□ -0.69
CCDC40-209ENST00000573474 ATP6V0CP27449 155 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 ARSJQ5FYB0 599 aaPredicted RBP10.77□□□□□ -0.69
CCDC40-209ENST00000573474 ETFRF1Q6IPR1 90 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 ALKAL2Q6UX46 152 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 SLC16A13Q7RTY0 426 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 OR5T1Q8NG75 326 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 SCARB1Q8WTV0 552 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 TAF15Q92804 592 aaKnown RBP eCLIP10.77□□□□□ -0.69
CCDC40-209ENST00000573474 SLC35E1Q96K37 410 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 WDR61Q9GZS3 305 aaKnown RBP10.77□□□□□ -0.69
CCDC40-209ENST00000573474 NPVFQ9HCQ7 196 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 WDR83OSQ9Y284 106 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 DMRT1Q9Y5R6 373 aa10.77□□□□□ -0.69
CCDC40-209ENST00000573474 MXRA5Q9NR99 2828 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 TRAV41A0A0B4J266 112 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 MPDU1O75352 247 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 SEC11BP0C7V7 166 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 SPP1P10451 314 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 HIST1H1BP16401 226 aaKnown RBP10.76□□□□□ -0.69
CCDC40-209ENST00000573474 FGF7P21781 194 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 OPRK1P41145 380 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 GAMTQ14353 236 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 MLANAQ16655 118 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 ECSCRQ19T08 205 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 BTNL8Q6UX41 500 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 TMED6Q8WW62 240 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 PRSS22Q9GZN4 317 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 NPFFR1Q9GZQ6 430 aa10.76□□□□□ -0.69
CCDC40-209ENST00000573474 FNDC4Q9H6D8 234 aaPredicted RBP10.76□□□□□ -0.69
CCDC40-209ENST00000573474 ANK3Q12955 4377 aaKnown RBP10.76□□□□□ -0.69
CCDC40-209ENST00000573474 G3V318 75 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 AP4M1O00189 453 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 AKR1C1Q04828 323 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 KLK9Q2XQG4 91 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 C19orf54Q5BKX5 351 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 TEPPQ6URK8 271 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 TREML4Q6UXN2 200 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 Q6ZS46 218 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 TMEM144Q7Z5S9 345 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 OR2T6Q8NHC8 308 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 FANCD2OSQ96PS1 177 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 SLC25A32Q9H2D1 315 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 THYN1Q9P016 225 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 ZNF580Q9UK33 172 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 KLK9Q9UKQ9 250 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 TIMM9Q9Y5J7 89 aa10.75□□□□□ -0.69
CCDC40-209ENST00000573474 IGLV11-55A0A075B6I3 123 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 DNAJC9-AS1A6NH13 148 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 CLDN34H7C241 214 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 TRIM77I1YAP6 450 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 I3L2K1 104 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 MT-CO2P00403 227 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 PRH1P02810 166 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 RUNX1Q01196 453 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 RAB31Q13636 194 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 CENPVQ7Z7K6 275 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-209ENST00000573474 ZNF709Q8N972 641 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 OR2G3Q8NGZ4 309 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 ZNF418Q8TF45 676 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-209ENST00000573474 DUX5Q96PT3 197 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 PSMG3Q9BT73 122 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-209ENST00000573474 SH3BGRL3Q9H299 93 aa10.74□□□□□ -0.69
CCDC40-209ENST00000573474 GSX1Q9H4S2 264 aaPredicted RBP10.74□□□□□ -0.69
CCDC40-209ENST00000573474 LSM4Q9Y4Z0 139 aaKnown RBP10.74□□□□□ -0.69
CCDC40-209ENST00000573474 SONP18583 2426 aaKnown RBP10.74□□□□□ -0.69
CCDC40-209ENST00000573474 C17orf112F2Z3M2 114 aa10.73□□□□□ -0.69
CCDC40-209ENST00000573474 Q71RC1 249 aaPredicted RBP10.73□□□□□ -0.69
CCDC40-209ENST00000573474 ACY3Q96HD9 319 aa10.73□□□□□ -0.69
CCDC40-209ENST00000573474 RSG1Q9BU20 258 aa10.73□□□□□ -0.69
CCDC40-209ENST00000573474 NPCDR1Q9BY65 106 aa10.73□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 74.6 ms