RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 IGKV1D-39P04432 117 aa12.35□□□□□ -0.43
CLN3-211ENST00000564091 PRSS3P35030 304 aa12.35□□□□□ -0.43
CLN3-211ENST00000564091 TOMM20LQ6UXN7 152 aa12.35□□□□□ -0.43
CLN3-211ENST00000564091 TCF24Q7RTU0 167 aa12.35□□□□□ -0.43
CLN3-211ENST00000564091 TBC1D26Q86UD7 250 aa12.35□□□□□ -0.43
CLN3-211ENST00000564091 SEC22AQ96IW7 307 aa12.35□□□□□ -0.43
CLN3-211ENST00000564091 TXN2Q99757 166 aa12.35□□□□□ -0.43
CLN3-211ENST00000564091 IGHV3-66A0A0C4DH42 116 aa12.34□□□□□ -0.43
CLN3-211ENST00000564091 GNG7O60262 68 aa12.34□□□□□ -0.43
CLN3-211ENST00000564091 CA1P00915 261 aaPredicted RBP12.34□□□□□ -0.43
CLN3-211ENST00000564091 TSPAN5P62079 268 aa12.34□□□□□ -0.43
CLN3-211ENST00000564091 LSM3P62310 102 aaKnown RBP12.34□□□□□ -0.43
CLN3-211ENST00000564091 RBMS2Q15434 407 aaKnown RBP12.34□□□□□ -0.43
CLN3-211ENST00000564091 SPINK9Q5DT21 86 aa12.34□□□□□ -0.43
CLN3-211ENST00000564091 LEMD1Q68G75 181 aa12.34□□□□□ -0.43
CLN3-211ENST00000564091 H2BFWTQ7Z2G1 175 aa12.34□□□□□ -0.43
CLN3-211ENST00000564091 CROCCP3Q8IVE0 287 aa12.34□□□□□ -0.43
CLN3-211ENST00000564091 ST8SIA2Q92186 375 aa12.34□□□□□ -0.43
CLN3-211ENST00000564091 IFNA4P05014 189 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 HSPE1P61604 102 aaKnown RBP12.33□□□□□ -0.44
CLN3-211ENST00000564091 PAFAH1B2P68402 229 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 PRR20EP86478 221 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 PRR20CP86479 221 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 PRR20DP86480 221 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 PRR20BP86481 221 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 PRR20AP86496 221 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 PRCDQ00LT1 54 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 IZUMO4Q1ZYL8 232 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 ZNF114Q8NC26 417 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 MRGPRFQ96AM1 343 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 MFFQ9GZY8 342 aa12.33□□□□□ -0.44
CLN3-211ENST00000564091 C11orf68Q9H3H3 251 aaKnown RBP12.33□□□□□ -0.44
CLN3-211ENST00000564091 DNASE2O00115 360 aaPredicted RBP12.32□□□□□ -0.44
CLN3-211ENST00000564091 ST8SIA3O43173 380 aa12.32□□□□□ -0.44
CLN3-211ENST00000564091 DFFBO76075 338 aa12.32□□□□□ -0.44
CLN3-211ENST00000564091 S100GP29377 79 aa12.32□□□□□ -0.44
CLN3-211ENST00000564091 DEFB131AP59861 70 aa12.32□□□□□ -0.44
CLN3-211ENST00000564091 ERHP84090 104 aaKnown RBP12.32□□□□□ -0.44
CLN3-211ENST00000564091 FAM24BQ8N5W8 94 aa12.32□□□□□ -0.44
CLN3-211ENST00000564091 GPX8Q8TED1 209 aa12.32□□□□□ -0.44
CLN3-211ENST00000564091 GINS3Q9BRX5 216 aa12.32□□□□□ -0.44
CLN3-211ENST00000564091 MS4A6AQ9H2W1 248 aa12.32□□□□□ -0.44
CLN3-211ENST00000564091 VSIRQ9H7M9 311 aa12.32□□□□□ -0.44
CLN3-211ENST00000564091 FAM212BQ9NTI7 297 aaPredicted RBP12.32□□□□□ -0.44
CLN3-211ENST00000564091 EIF4EP06730 217 aaKnown RBP12.31□□□□□ -0.44
CLN3-211ENST00000564091 RPL11P62913 178 aaKnown RBP12.31□□□□□ -0.44
CLN3-211ENST00000564091 TMEM187Q14656 261 aa12.31□□□□□ -0.44
CLN3-211ENST00000564091 LPCAT3Q6P1A2 487 aa12.31□□□□□ -0.44
CLN3-211ENST00000564091 C2CD4CQ8TF44 421 aa12.31□□□□□ -0.44
CLN3-211ENST00000564091 PUS1Q9Y606 427 aaKnown RBP eCLIP12.31□□□□□ -0.44
CLN3-211ENST00000564091 DNAH2Q9P225 4427 aa12.31□□□□□ -0.44
CLN3-211ENST00000564091 PCLOQ9Y6V0 5065 aa12.3□□□□□ -0.44
CLN3-211ENST00000564091 NPBWR1P48145 328 aa12.3□□□□□ -0.44
CLN3-211ENST00000564091 SNX29P2Q8IUI4 249 aa12.3□□□□□ -0.44
CLN3-211ENST00000564091 DUSP18Q8NEJ0 188 aa12.3□□□□□ -0.44
CLN3-211ENST00000564091 COMMD3Q9UBI1 195 aa12.3□□□□□ -0.44
CLN3-211ENST00000564091 FAT2Q9NYQ8 4349 aa12.3□□□□□ -0.44
CLN3-211ENST00000564091 A0A1B0GU03 582 aa12.29□□□□□ -0.44
CLN3-211ENST00000564091 CD5P06127 495 aa12.29□□□□□ -0.44
CLN3-211ENST00000564091 KCTD21Q4G0X4 260 aa12.29□□□□□ -0.44
CLN3-211ENST00000564091 ZNF600Q6ZNG1 722 aa12.29□□□□□ -0.44
CLN3-211ENST00000564091 YIPF6Q96EC8 236 aa12.29□□□□□ -0.44
CLN3-211ENST00000564091 ZFAND3Q9H8U3 227 aa12.29□□□□□ -0.44
CLN3-211ENST00000564091 RABAC1Q9UI14 185 aa12.29□□□□□ -0.44
CLN3-211ENST00000564091 RYR1P21817 5038 aa12.29□□□□□ -0.44
CLN3-211ENST00000564091 A0A0B4J293 547 aa12.28□□□□□ -0.44
CLN3-211ENST00000564091 IGLL5B9A064 214 aa12.28□□□□□ -0.44
CLN3-211ENST00000564091 TMEM50AO95807 157 aa12.28□□□□□ -0.44
CLN3-211ENST00000564091 IGKV1-5P01602 117 aa12.28□□□□□ -0.44
CLN3-211ENST00000564091 PI3P19957 117 aa12.28□□□□□ -0.44
CLN3-211ENST00000564091 SNCAP37840 140 aa12.28□□□□□ -0.44
CLN3-211ENST00000564091 UCP3P55916 312 aa12.28□□□□□ -0.44
CLN3-211ENST00000564091 MRPL36Q9P0J6 103 aaKnown RBP12.28□□□□□ -0.44
CLN3-211ENST00000564091 M0QYG6 137 aa12.27□□□□□ -0.45
CLN3-211ENST00000564091 GIG44P09565 113 aaPredicted RBP12.27□□□□□ -0.45
CLN3-211ENST00000564091 MLANAQ16655 118 aa12.27□□□□□ -0.45
CLN3-211ENST00000564091 STHQ8IWL8 128 aa12.27□□□□□ -0.45
CLN3-211ENST00000564091 Q8NAQ8 132 aa12.27□□□□□ -0.45
CLN3-211ENST00000564091 SCPEP1Q9HB40 452 aa12.27□□□□□ -0.45
CLN3-211ENST00000564091 TRAV2A0A0B4J234 112 aa12.26□□□□□ -0.45
CLN3-211ENST00000564091 SMIM31A0A1B0GVY4 71 aa12.26□□□□□ -0.45
CLN3-211ENST00000564091 IFNA17P01571 189 aa12.26□□□□□ -0.45
CLN3-211ENST00000564091 RBMY1A1P0DJD3 496 aaKnown RBP12.26□□□□□ -0.45
CLN3-211ENST00000564091 RBMY1CP0DJD4 496 aa12.26□□□□□ -0.45
CLN3-211ENST00000564091 PGAM2P15259 253 aa12.26□□□□□ -0.45
CLN3-211ENST00000564091 RCVRNP35243 200 aa12.26□□□□□ -0.45
CLN3-211ENST00000564091 ETV6P41212 452 aa12.26□□□□□ -0.45
CLN3-211ENST00000564091 PPP5CP53041 499 aa12.26□□□□□ -0.45
CLN3-211ENST00000564091 RBMY1FQ15415 496 aaKnown RBP12.26□□□□□ -0.45
CLN3-211ENST00000564091 SLC35G3Q8N808 338 aa12.26□□□□□ -0.45
CLN3-211ENST00000564091 APLNQ9ULZ1 77 aa12.26□□□□□ -0.45
CLN3-211ENST00000564091 DNAH17Q9UFH2 4485 aa12.25□□□□□ -0.45
CLN3-211ENST00000564091 IGHV4-28A0A0C4DH34 117 aa12.25□□□□□ -0.45
CLN3-211ENST00000564091 KNCNA6PVL3 124 aa12.25□□□□□ -0.45
CLN3-211ENST00000564091 APOA1P02647 267 aa12.25□□□□□ -0.45
CLN3-211ENST00000564091 P0C879 139 aa12.25□□□□□ -0.45
CLN3-211ENST00000564091 RNASE2P10153 161 aaKnown RBP12.25□□□□□ -0.45
CLN3-211ENST00000564091 NPPCP23582 126 aa12.25□□□□□ -0.45
CLN3-211ENST00000564091 TCTAP57738 103 aa12.25□□□□□ -0.45
CLN3-211ENST00000564091 RNASE12Q5GAN4 147 aaKnown RBP12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 94.6 ms