RNA–Protein interactions for RNA: ENST00000531727.5

CPSF1-207, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3 BASIC

Gene CPSF1, Length 704 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-207ENST00000531727 FAM25CB3EWG5 89 aa12.43□□□□□ -0.42
CPSF1-207ENST00000531727 FAM25GB3EWG6 89 aa12.43□□□□□ -0.42
CPSF1-207ENST00000531727 IGKV1-5P01602 117 aa12.43□□□□□ -0.42
CPSF1-207ENST00000531727 PGAM2P15259 253 aa12.43□□□□□ -0.42
CPSF1-207ENST00000531727 IZUMO4Q1ZYL8 232 aa12.43□□□□□ -0.42
CPSF1-207ENST00000531727 RNASE12Q5GAN4 147 aaKnown RBP12.43□□□□□ -0.42
CPSF1-207ENST00000531727 RNASE10Q5GAN6 216 aaKnown RBP12.43□□□□□ -0.42
CPSF1-207ENST00000531727 MZT2AQ6P582 158 aa12.43□□□□□ -0.42
CPSF1-207ENST00000531727 APRG1Q8IVJ8 170 aa12.43□□□□□ -0.42
CPSF1-207ENST00000531727 LINC00476Q8WZB0 136 aa12.43□□□□□ -0.42
CPSF1-207ENST00000531727 PINX1Q96BK5 328 aaKnown RBP12.43□□□□□ -0.42
CPSF1-207ENST00000531727 C6orf62Q9GZU0 229 aaPredicted RBP12.43□□□□□ -0.42
CPSF1-207ENST00000531727 KLK11Q9UBX7 282 aa12.43□□□□□ -0.42
CPSF1-207ENST00000531727 TRAV14DV4A0A0A6YYC5 116 aa12.42□□□□□ -0.42
CPSF1-207ENST00000531727 P0C879 139 aa12.42□□□□□ -0.42
CPSF1-207ENST00000531727 ATF4P18848 351 aaPredicted RBP12.42□□□□□ -0.42
CPSF1-207ENST00000531727 PI3P19957 117 aa12.42□□□□□ -0.42
CPSF1-207ENST00000531727 CMC4P56277 68 aaPredicted RBP12.42□□□□□ -0.42
CPSF1-207ENST00000531727 PIGPP57054 158 aa12.42□□□□□ -0.42
CPSF1-207ENST00000531727 SPINK9Q5DT21 86 aa12.42□□□□□ -0.42
CPSF1-207ENST00000531727 FAM90A2PQ658T7 463 aa12.42□□□□□ -0.42
CPSF1-207ENST00000531727 ARRDC1Q8N5I2 433 aa12.42□□□□□ -0.42
CPSF1-207ENST00000531727 OR52I2Q8NH67 350 aa12.42□□□□□ -0.42
CPSF1-207ENST00000531727 AP3S1Q92572 193 aa12.42□□□□□ -0.42
CPSF1-207ENST00000531727 TP53RKQ96S44 253 aa12.42□□□□□ -0.42
CPSF1-207ENST00000531727 IGKV3-7A0A075B6H7 116 aa12.41□□□□□ -0.42
CPSF1-207ENST00000531727 INS-IGF2F8WCM5 200 aa12.41□□□□□ -0.42
CPSF1-207ENST00000531727 CD3DP04234 171 aa12.41□□□□□ -0.42
CPSF1-207ENST00000531727 TBPP20226 339 aa12.41□□□□□ -0.42
CPSF1-207ENST00000531727 NPBWR1P48145 328 aa12.41□□□□□ -0.42
CPSF1-207ENST00000531727 TFPI2P48307 235 aa12.41□□□□□ -0.42
CPSF1-207ENST00000531727 SLC35G3Q8N808 338 aa12.41□□□□□ -0.42
CPSF1-207ENST00000531727 GINS3Q9BRX5 216 aa12.41□□□□□ -0.42
CPSF1-207ENST00000531727 NAA50Q9GZZ1 169 aaKnown RBP12.41□□□□□ -0.42
CPSF1-207ENST00000531727 MTFP1Q9UDX5 166 aa12.41□□□□□ -0.42
CPSF1-207ENST00000531727 IGHV3OR16-13A0A075B7E8 117 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 IGHV3-74A0A0B4J1X5 117 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 A0A0B4J293 547 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 C3orf85A0A1B0GTC6 90 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 ST8SIA3O43173 380 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 ATG12O94817 140 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 ZNF182P17025 639 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-207ENST00000531727 SNCAP37840 140 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 AKR1C2P52895 323 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 ZNF124Q15973 351 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 CTF1Q16619 201 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 CEMP1Q6PRD7 247 aaPredicted RBP12.4□□□□□ -0.42
CPSF1-207ENST00000531727 TOMM20LQ6UXN7 152 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 TMEM217Q8N7C4 229 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 DUSP18Q8NEJ0 188 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 EXTL2Q9UBQ6 330 aa12.4□□□□□ -0.42
CPSF1-207ENST00000531727 GABARAPO95166 117 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 IFNA17P01571 189 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 CD5P06127 495 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 PPP5CP53041 499 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 PAFAH1B2P68402 229 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 PVRIGQ6DKI7 326 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 ZNF600Q6ZNG1 722 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 TCF24Q7RTU0 167 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 GBGT1Q8N5D6 347 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 ZFAND1Q8TCF1 268 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 ABHD1Q96SE0 405 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 CSTL1Q9H114 145 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 VSIRQ9H7M9 311 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 ZFAND3Q9H8U3 227 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 COPZ2Q9P299 210 aa12.39□□□□□ -0.43
CPSF1-207ENST00000531727 CORTO00230 105 aa12.38□□□□□ -0.43
CPSF1-207ENST00000531727 LY6G6CO95867 125 aa12.38□□□□□ -0.43
CPSF1-207ENST00000531727 TRIM16LQ309B1 348 aa12.38□□□□□ -0.43
CPSF1-207ENST00000531727 CCDC71LQ8N9Z2 235 aa12.38□□□□□ -0.43
CPSF1-207ENST00000531727 TMEM229BQ8NBD8 167 aa12.38□□□□□ -0.43
CPSF1-207ENST00000531727 OR4D10Q8NGI6 311 aa12.38□□□□□ -0.43
CPSF1-207ENST00000531727 C15orf40Q8WUR7 153 aa12.38□□□□□ -0.43
CPSF1-207ENST00000531727 ST8SIA2Q92186 375 aa12.38□□□□□ -0.43
CPSF1-207ENST00000531727 PDCD10Q9BUL8 212 aa12.38□□□□□ -0.43
CPSF1-207ENST00000531727 PUS1Q9Y606 427 aaKnown RBP eCLIP12.38□□□□□ -0.43
CPSF1-207ENST00000531727 MPTX1A8MV57 137 aa12.37□□□□□ -0.43
CPSF1-207ENST00000531727 TMEM50AO95807 157 aa12.37□□□□□ -0.43
CPSF1-207ENST00000531727 APOHP02749 345 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-207ENST00000531727 CD74P04233 296 aa12.37□□□□□ -0.43
CPSF1-207ENST00000531727 RNASE2P10153 161 aaKnown RBP12.37□□□□□ -0.43
CPSF1-207ENST00000531727 UCP1P25874 307 aa12.37□□□□□ -0.43
CPSF1-207ENST00000531727 HOXA1P49639 335 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-207ENST00000531727 SUB1P53999 127 aaKnown RBP eCLIP12.37□□□□□ -0.43
CPSF1-207ENST00000531727 SP6Q3SY56 376 aa12.37□□□□□ -0.43
CPSF1-207ENST00000531727 LILRB2Q8N423 598 aa12.37□□□□□ -0.43
CPSF1-207ENST00000531727 OR13C8Q8NGS7 320 aa12.37□□□□□ -0.43
CPSF1-207ENST00000531727 TERB2Q8NHR7 220 aa12.37□□□□□ -0.43
CPSF1-207ENST00000531727 GATAD1Q8WUU5 269 aa12.37□□□□□ -0.43
CPSF1-207ENST00000531727 RRNAD1Q96FB5 475 aaKnown RBP12.37□□□□□ -0.43
CPSF1-207ENST00000531727 KLK5Q9Y337 293 aaPredicted RBP12.37□□□□□ -0.43
CPSF1-207ENST00000531727 A0A1B0GU03 582 aa12.36□□□□□ -0.43
CPSF1-207ENST00000531727 B3GALNT1O75752 331 aa12.36□□□□□ -0.43
CPSF1-207ENST00000531727 RAB3DO95716 219 aa12.36□□□□□ -0.43
CPSF1-207ENST00000531727 SMIM18P0DKX4 95 aa12.36□□□□□ -0.43
CPSF1-207ENST00000531727 ETV6P41212 452 aa12.36□□□□□ -0.43
CPSF1-207ENST00000531727 TAS2R19P59542 299 aa12.36□□□□□ -0.43
CPSF1-207ENST00000531727 SCGB2B2Q4G0G5 96 aa12.36□□□□□ -0.43
CPSF1-207ENST00000531727 MS4A6AQ9H2W1 248 aa12.36□□□□□ -0.43
CPSF1-207ENST00000531727 TMEM231Q9H6L2 316 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 79.5 ms