RNA–Protein interactions for RNA: ENST00000492954.1

PTPRU-207, Transcript of protein tyrosine phosphatase, receptor type U, humanhuman

TSL 2

Gene PTPRU, Length 625 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRU-207ENST00000492954 ANKRD55Q3KP44 614 aa13.48□□□□□ -0.25
PTPRU-207ENST00000492954 ZFAND6Q6FIF0 208 aa13.48□□□□□ -0.25
PTPRU-207ENST00000492954 PINX1Q96BK5 328 aaKnown RBP13.48□□□□□ -0.25
PTPRU-207ENST00000492954 C5orf66Q9H5L9 145 aa13.48□□□□□ -0.25
PTPRU-207ENST00000492954 A0A0G2JRQ6 117 aa13.47□□□□□ -0.25
PTPRU-207ENST00000492954 CTDSPLO15194 276 aa13.47□□□□□ -0.25
PTPRU-207ENST00000492954 ATG12O94817 140 aa13.47□□□□□ -0.25
PTPRU-207ENST00000492954 IFNA17P01571 189 aa13.47□□□□□ -0.25
PTPRU-207ENST00000492954 UCP1P25874 307 aa13.47□□□□□ -0.25
PTPRU-207ENST00000492954 MFAP4P55083 255 aa13.47□□□□□ -0.25
PTPRU-207ENST00000492954 SLC35G3Q8N808 338 aa13.47□□□□□ -0.25
PTPRU-207ENST00000492954 OR4C16Q8NGL9 310 aa13.47□□□□□ -0.25
PTPRU-207ENST00000492954 RTBDNQ9BSG5 229 aaPredicted RBP13.47□□□□□ -0.25
PTPRU-207ENST00000492954 C6orf62Q9GZU0 229 aaPredicted RBP13.47□□□□□ -0.25
PTPRU-207ENST00000492954 GAR1Q9NY12 217 aaKnown RBP13.47□□□□□ -0.25
PTPRU-207ENST00000492954 DISC1C4P0D8 188 aa13.46□□□□□ -0.25
PTPRU-207ENST00000492954 H3BMQ9 156 aa13.46□□□□□ -0.25
PTPRU-207ENST00000492954 NUPL2O15504 423 aaKnown RBP13.46□□□□□ -0.25
PTPRU-207ENST00000492954 AKAIN1P0CW23 69 aa13.46□□□□□ -0.25
PTPRU-207ENST00000492954 FCGR2BP31994 310 aaPredicted RBP13.46□□□□□ -0.25
PTPRU-207ENST00000492954 RPL5P46777 297 aaKnown RBP13.46□□□□□ -0.25
PTPRU-207ENST00000492954 TXN2Q99757 166 aa13.46□□□□□ -0.25
PTPRU-207ENST00000492954 SPAG8Q99932 426 aaPredicted RBP13.46□□□□□ -0.25
PTPRU-207ENST00000492954 C14orf166Q9Y224 244 aaKnown RBP13.46□□□□□ -0.25
PTPRU-207ENST00000492954 C15orf62A8K5M9 175 aa13.45□□□□□ -0.26
PTPRU-207ENST00000492954 K7EMT4 169 aa13.45□□□□□ -0.26
PTPRU-207ENST00000492954 TSPAN4O14817 238 aa13.45□□□□□ -0.26
PTPRU-207ENST00000492954 NOL3O60936 208 aaKnown RBP13.45□□□□□ -0.26
PTPRU-207ENST00000492954 OR5AC1P0C628 307 aa13.45□□□□□ -0.26
PTPRU-207ENST00000492954 RELQ04864 619 aaPredicted RBP13.45□□□□□ -0.26
PTPRU-207ENST00000492954 RNASE11Q8TAA1 199 aaKnown RBP13.45□□□□□ -0.26
PTPRU-207ENST00000492954 RRNAD1Q96FB5 475 aaKnown RBP13.45□□□□□ -0.26
PTPRU-207ENST00000492954 PDCD10Q9BUL8 212 aa13.45□□□□□ -0.26
PTPRU-207ENST00000492954 SLIRPQ9GZT3 109 aaKnown RBP13.45□□□□□ -0.26
PTPRU-207ENST00000492954 TMEM222Q9H0R3 208 aa13.45□□□□□ -0.26
PTPRU-207ENST00000492954 RABL2AQ9UBK7 228 aaPredicted RBP13.45□□□□□ -0.26
PTPRU-207ENST00000492954 RABL2BQ9UNT1 228 aa13.45□□□□□ -0.26
PTPRU-207ENST00000492954 TENM2Q9NT68 2774 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 TEX13DA0A0J9YY54 714 aaPredicted RBP13.44□□□□□ -0.26
PTPRU-207ENST00000492954 INS-IGF2F8WCM5 200 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 B3GALNT1O75752 331 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 YIF1AO95070 293 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 SNCAP37840 140 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 ETV6P41212 452 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 HOXA1P49639 335 aaPredicted RBP13.44□□□□□ -0.26
PTPRU-207ENST00000492954 LAMTOR1Q6IAA8 161 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 OR51S1Q8NGJ8 323 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 LHFPL5Q8TAF8 219 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 GLYATL2Q8WU03 294 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 GGTLC1Q9BX51 225 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 NXF2Q9GZY0 626 aaKnown RBP13.44□□□□□ -0.26
PTPRU-207ENST00000492954 NAA60Q9H7X0 242 aa13.44□□□□□ -0.26
PTPRU-207ENST00000492954 CSMD3Q7Z407 3707 aa13.43□□□□□ -0.26
PTPRU-207ENST00000492954 DYNC2H1Q8NCM8 4307 aaKnown RBP13.43□□□□□ -0.26
PTPRU-207ENST00000492954 ANKRD20A5PA0PJZ0 165 aa13.43□□□□□ -0.26
PTPRU-207ENST00000492954 GSTZ1O43708 216 aaPredicted RBP13.43□□□□□ -0.26
PTPRU-207ENST00000492954 GNG7O60262 68 aa13.43□□□□□ -0.26
PTPRU-207ENST00000492954 CDS2O95674 445 aa13.43□□□□□ -0.26
PTPRU-207ENST00000492954 RNASE2P10153 161 aaKnown RBP13.43□□□□□ -0.26
PTPRU-207ENST00000492954 SURF2Q15527 256 aaPredicted RBP13.43□□□□□ -0.26
PTPRU-207ENST00000492954 Q6ZRM9 215 aa13.43□□□□□ -0.26
PTPRU-207ENST00000492954 UBQLN2Q9UHD9 624 aa13.43□□□□□ -0.26
PTPRU-207ENST00000492954 SMPXQ9UHP9 88 aa13.43□□□□□ -0.26
PTPRU-207ENST00000492954 GPR132Q9UNW8 380 aa13.43□□□□□ -0.26
PTPRU-207ENST00000492954 STARD9Q9P2P6 4700 aa13.42□□□□□ -0.26
PTPRU-207ENST00000492954 LOC102724200A0A096LPH7 203 aaPredicted RBP13.42□□□□□ -0.26
PTPRU-207ENST00000492954 IGHV3-49A0A0A0MS15 119 aa13.42□□□□□ -0.26
PTPRU-207ENST00000492954 TNFSF8P32971 234 aa13.42□□□□□ -0.26
PTPRU-207ENST00000492954 PVRIGQ6DKI7 326 aa13.42□□□□□ -0.26
PTPRU-207ENST00000492954 SELENOHQ8IZQ5 122 aaKnown RBP13.42□□□□□ -0.26
PTPRU-207ENST00000492954 RBPMSQ93062 196 aaKnown RBP13.42□□□□□ -0.26
PTPRU-207ENST00000492954 OR10C1Q96KK4 312 aa13.42□□□□□ -0.26
PTPRU-207ENST00000492954 RNF2Q99496 336 aa13.42□□□□□ -0.26
PTPRU-207ENST00000492954 PRRT1Q99946 306 aa13.42□□□□□ -0.26
PTPRU-207ENST00000492954 SOSTQ9BQB4 213 aa13.42□□□□□ -0.26
PTPRU-207ENST00000492954 RHPN1-AS1Q9BWJ2 59 aa13.42□□□□□ -0.26
PTPRU-207ENST00000492954 ENY2Q9NPA8 101 aa13.42□□□□□ -0.26
PTPRU-207ENST00000492954 RSL24D1Q9UHA3 163 aaKnown RBP13.42□□□□□ -0.26
PTPRU-207ENST00000492954 IGHV7-4-1A0A0J9YVY3 117 aa13.41□□□□□ -0.26
PTPRU-207ENST00000492954 CRYM-AS1A6NIL9 109 aa13.41□□□□□ -0.26
PTPRU-207ENST00000492954 CHEK1O14757 476 aa13.41□□□□□ -0.26
PTPRU-207ENST00000492954 SUB1P53999 127 aaKnown RBP eCLIP13.41□□□□□ -0.26
PTPRU-207ENST00000492954 ODF3L2Q3SX64 289 aa13.41□□□□□ -0.26
PTPRU-207ENST00000492954 FAM219AQ8IW50 185 aa13.41□□□□□ -0.26
PTPRU-207ENST00000492954 TMEM116Q8NCL8 245 aa13.41□□□□□ -0.26
PTPRU-207ENST00000492954 DUSP18Q8NEJ0 188 aa13.41□□□□□ -0.26
PTPRU-207ENST00000492954 MCFD2Q8NI22 146 aa13.41□□□□□ -0.26
PTPRU-207ENST00000492954 FABP12A6NFH5 140 aa13.4□□□□□ -0.26
PTPRU-207ENST00000492954 NPBWR1P48145 328 aa13.4□□□□□ -0.26
PTPRU-207ENST00000492954 DHODHQ02127 395 aa13.4□□□□□ -0.26
PTPRU-207ENST00000492954 AARDQ4LEZ3 155 aa13.4□□□□□ -0.26
PTPRU-207ENST00000492954 TMEM268Q5VZI3 342 aa13.4□□□□□ -0.26
PTPRU-207ENST00000492954 GPR146Q96CH1 333 aa13.4□□□□□ -0.26
PTPRU-207ENST00000492954 CACNG5Q9UF02 275 aa13.4□□□□□ -0.26
PTPRU-207ENST00000492954 IGHV3OR16-13A0A075B7E8 117 aa13.39□□□□□ -0.27
PTPRU-207ENST00000492954 TRAV14DV4A0A0A6YYC5 116 aa13.39□□□□□ -0.27
PTPRU-207ENST00000492954 IGHV3-74A0A0B4J1X5 117 aa13.39□□□□□ -0.27
PTPRU-207ENST00000492954 OR4C46A6NHA9 309 aa13.39□□□□□ -0.27
PTPRU-207ENST00000492954 SPCS3P61009 180 aa13.39□□□□□ -0.27
PTPRU-207ENST00000492954 TOMM20LQ6UXN7 152 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 67.9 ms