RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 TGFAP01135 160 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 TIGITQ495A1 244 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 C11orf53Q8IXP5 236 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 FGFRL1Q8N441 504 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 DRAM1Q8N682 238 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF436-AS1Q8NC38 126 aaPredicted RBP4.41□□□□□ -1.7
SYNE1-220ENST00000471834 RFESDQ8TAC1 157 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 TECRQ9NZ01 308 aaKnown RBP4.41□□□□□ -1.7
SYNE1-220ENST00000471834 TRAV9-2A0A087WT02 112 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 IGHV5-10-1A0A0J9YXX1 117 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 C19orf71A6NCJ1 209 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 OR5AL1P0C617 328 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 TCL1AP56279 114 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 PQLC2Q6ZP29 291 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 NEU4Q8WWR8 484 aaPredicted RBP4.4□□□□□ -1.7
SYNE1-220ENST00000471834 HSD17B10Q99714 261 aaKnown RBP4.4□□□□□ -1.7
SYNE1-220ENST00000471834 CRIM1Q9NZV1 1036 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 CGB1A6NKQ9 187 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 FGF6P10767 208 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 S100A4P26447 101 aaKnown RBP4.4□□□□□ -1.7
SYNE1-220ENST00000471834 SLC23A3Q6PIS1 610 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 TUSC5Q8IXB3 177 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 RSG1Q9BU20 258 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 NAT8BQ9UHF3 227 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 OOEPA6NGQ2 149 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 LINC01619G3V211 115 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 RRHO14718 337 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 TIMM23O14925 209 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF324O75467 553 aaPredicted RBP4.4□□□□□ -1.7
SYNE1-220ENST00000471834 SERF1AO75920 110 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 C3orf79P0CE67 100 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 PSG2P11465 335 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 PSMB2P49721 201 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 FOXF2Q12947 444 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 FAM222BQ8WU58 562 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 BCL2L2Q92843 193 aaPredicted RBP4.4□□□□□ -1.7
SYNE1-220ENST00000471834 FAM167A-AS1Q96KT0 104 aa4.4□□□□□ -1.7
SYNE1-220ENST00000471834 QTRT1Q9BXR0 403 aaKnown RBP4.4□□□□□ -1.7
SYNE1-220ENST00000471834 C16orf97H3BN30 126 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 K7EN84 100 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 CAMPP49913 170 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 SMRP1Q8NCR6 262 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 OR4X2Q8NGF9 303 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 RPEQ96AT9 228 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 ALKBH7Q9BT30 221 aaPredicted RBP4.4□□□□□ -1.71
SYNE1-220ENST00000471834 CLN8Q9UBY8 286 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 AMMECR1Q9Y4X0 333 aaPredicted RBP4.4□□□□□ -1.71
SYNE1-220ENST00000471834 CEP350Q5VT06 3117 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 CSN3P07498 182 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 HLA-DRB4P13762 266 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 ZNF25P17030 456 aaPredicted RBP4.4□□□□□ -1.71
SYNE1-220ENST00000471834 RRN3P1Q2M238 152 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 ZNF841Q6ZN19 808 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 MOGAT3Q86VF5 341 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 OR8A1Q8NGG7 326 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 IL36RNQ9UBH0 155 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 HLA-DRB4X5D2U9 266 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 SCTP09683 121 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 AESQ08117 197 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 GABRA6Q16445 453 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 LINC01545Q5VT33 79 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 ABHD3Q8WU67 409 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 UCN2Q96RP3 112 aa4.4□□□□□ -1.71
SYNE1-220ENST00000471834 TNRC6BQ9UPQ9 1833 aaKnown RBP4.4□□□□□ -1.71
SYNE1-220ENST00000471834 CD5LO43866 347 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 PPOXP50336 477 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 PMS2CLQ68D20 193 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 RBPMS2Q6ZRY4 209 aaKnown RBP4.39□□□□□ -1.71
SYNE1-220ENST00000471834 GTF2H5Q6ZYL4 71 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 MMD2Q8IY49 270 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 PIP4P2Q8N4L2 257 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 ZNF645Q8N7E2 425 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 GFRA4Q9GZZ7 299 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 CTNNBIP1Q9NSA3 81 aaPredicted RBP4.39□□□□□ -1.71
SYNE1-220ENST00000471834 TMEM140Q9NV12 185 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 TAX1BP3O14907 124 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 SIAH2O43255 324 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 GNG3P63215 75 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 OCC1Q8TAD7 63 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 PATE3B3GLJ2 98 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 CELA2AP08217 269 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 OR9G9P0C7N8 305 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 HTR1DP28221 377 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 OR4C13Q8NGP0 309 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 SSMEM1Q8WWF3 244 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 SFRP2Q96HF1 295 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 TBX15Q96SF7 602 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 MAP1LC3CQ9BXW4 147 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 APCSP02743 223 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 VMA21Q3ZAQ7 101 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 C1orf185Q5T7R7 199 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 PDPNQ86YL7 162 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 CLEC7AQ9BXN2 247 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 NRN1Q9NPD7 142 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 KNL1Q8NG31 2342 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 COL27A1Q8IZC6 1860 aaPredicted RBP4.39□□□□□ -1.71
SYNE1-220ENST00000471834 A0A1B0GWB2 263 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 RPL7P18124 248 aaKnown RBP4.39□□□□□ -1.71
SYNE1-220ENST00000471834 ZNF137PP52743 207 aa4.39□□□□□ -1.71
SYNE1-220ENST00000471834 DSCR9P59020 149 aa4.39□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms