RNA–Protein interactions for RNA: ENST00000438581.6

TMEM39A-202, Transcript of transmembrane protein 39A, humanhuman

TSL 1 (best)

Gene TMEM39A, Length 4,393 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-202ENST00000438581 OR4C12Q96R67 309 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 METRNQ9UJH8 293 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 KBTBD11-OT1A0A1B0GTJ5 212 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 A6NDN8 102 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 FABP4P15090 132 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 ZNF90Q03938 601 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 RBFOX3A6NFN3 312 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 MLNRO43193 412 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 TNFRSF6BO95407 300 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 EGR1P18146 543 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 UBE2L3P68036 154 aaKnown RBP6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 PSG5Q15238 335 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 LDLRAD2Q5SZI1 272 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 TEPPQ6URK8 271 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 FAM90A1Q86YD7 464 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 OR5AN1Q8NGI8 311 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 OR4X1Q8NH49 305 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 WFDC12Q8WWY7 111 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 SAMD10Q9BYL1 202 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 SLC35B3Q9H1N7 401 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 PARP11Q9NR21 331 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 SLC45A2Q9UMX9 530 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 TCF19Q9Y242 345 aa6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 TSSC4Q9Y5U2 329 aaPredicted RBP6.77□□□□□ -1.33
TMEM39A-202ENST00000438581 TRBV6-7A0A0A0MS04 114 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 SRRM5B3KS81 715 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 SEC11BP0C7V7 166 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 HSPE1P61604 102 aaKnown RBP6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 HOXA4Q00056 320 aaPredicted RBP6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 LY6EQ16553 131 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 SPRY4Q9C004 299 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 COX11Q9Y6N1 276 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 TMEM131Q92545 1883 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 IGKV3-15P01624 115 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 ORM1P02763 201 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 SLC25A5P05141 298 aaKnown RBP6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 ZNF585BQ52M93 769 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 BARX1Q9HBU1 254 aaPredicted RBP6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 UQCR10Q9UDW1 63 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 EML6Q6ZMW3 1958 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 TNFSF13O75888 250 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 KBTBD11O94819 623 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 PLAUP00749 431 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 CRYGBP07316 175 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 CNN1P51911 297 aaKnown RBP6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 ZNF497Q6ZNH5 498 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 TMEM183AQ8IXX5 376 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 MMD2Q8IY49 270 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 OR4C13Q8NGP0 309 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 CTDSP1Q9GZU7 261 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 HSPB8Q9UJY1 196 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 SPINK4O60575 86 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 WISP2O76076 250 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 CA7P43166 264 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 TMEM204Q9BSN7 226 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 NPVFQ9HCQ7 196 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 FAM215AQ9Y5M1 114 aa6.76□□□□□ -1.33
TMEM39A-202ENST00000438581 PAGE4O60829 102 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 CD24P25063 80 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 HIST3H2BBQ8N257 126 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 OR4F17Q8NGA8 305 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 NEU4Q8WWR8 484 aaPredicted RBP6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 QTRT1Q9BXR0 403 aaKnown RBP6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 AURKAIP1Q9NWT8 199 aaPredicted RBP6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 A0A0C4DFX4 3053 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 IGHV3-35A0A0C4DH35 117 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 B4DEV8 164 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 PITX3O75364 302 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 FOXH1O75593 365 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 QRFPP83859 136 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 OR5A1Q8NGJ0 315 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 SSBP3Q9BWW4 388 aaPredicted RBP6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 ZNF331Q9NQX6 463 aaPredicted RBP6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 CBLN4Q9NTU7 201 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 LAMA2P24043 3122 aaKnown RBP6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 ZNF672Q499Z4 452 aaPredicted RBP6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 OR8I2Q8N0Y5 310 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 OR9G4Q8NGQ1 327 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 AQP10Q96PS8 301 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 SH3BGRL3Q9H299 93 aa6.75□□□□□ -1.33
TMEM39A-202ENST00000438581 TMEM189A5PLL7 270 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 CEACAM18A8MTB9 384 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 M0QZ24 198 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 FAM106CPP0CH98 169 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 PMCHP20382 165 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 HNRNPA3P51991 378 aaKnown RBP6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 ZNF146Q15072 292 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 MIC13Q5XKP0 118 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 BAGE3Q86Y29 109 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 BAGE2Q86Y30 109 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 OR1L4Q8NGR5 311 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 LSM10Q969L4 123 aaKnown RBP6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 TMEM70Q9BUB7 260 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 AAMDCQ9H7C9 122 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 MRPL27Q9P0M9 148 aaKnown RBP6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 UFC1Q9Y3C8 167 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 LINC00312Q9Y6C7 94 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 CD8AP01732 235 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 RND2P52198 227 aa6.74□□□□□ -1.33
TMEM39A-202ENST00000438581 SLC35E3Q7Z769 313 aa6.74□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 66.8 ms