RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 BORCS7-ASMTA0A0B4J1R7 106 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 IGSF23A1L1A6 192 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 CGB1A6NKQ9 187 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 NPIPB5A8MRT5 1133 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 TMEM50AO95807 157 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 AMY1AP04745 511 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 RNASE1P07998 156 aaKnown RBP11.21□□□□□ -0.61
SKA1-202ENST00000398452 RNASE2P10153 161 aaKnown RBP11.21□□□□□ -0.61
SKA1-202ENST00000398452 AREGP15514 252 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 HIST1H1BP16401 226 aaKnown RBP11.21□□□□□ -0.61
SKA1-202ENST00000398452 SLC35B1P78383 322 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 NDPQ00604 133 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 ATP6V1FQ16864 119 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 TMUB2Q71RG4 321 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 KCNRGQ8N5I3 272 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 TTC9CQ8N5M4 171 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 ZNF114Q8NC26 417 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 OR5T1Q8NG75 326 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 OR1P1Q8NH06 330 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 FAM110DQ8TAY7 271 aaPredicted RBP11.21□□□□□ -0.61
SKA1-202ENST00000398452 RNASEH2CQ8TDP1 164 aaKnown RBP11.21□□□□□ -0.61
SKA1-202ENST00000398452 MISP3Q96FF7 219 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 OR4C12Q96R67 309 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 ARPC5LQ9BPX5 153 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 WNT10AQ9GZT5 417 aa11.21□□□□□ -0.61
SKA1-202ENST00000398452 F11RQ9Y624 299 aaKnown RBP11.21□□□□□ -0.61
SKA1-202ENST00000398452 MXRA5Q9NR99 2828 aa11.21□□□□□ -0.62
SKA1-202ENST00000398452 SMCO3A2RU48 225 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 C15orf62A8K5M9 175 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 FBXO24O75426 580 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 IFNA5P01569 189 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 IGF1P05019 195 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 OPRK1P41145 380 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 UBA52P62987 128 aaKnown RBP11.2□□□□□ -0.62
SKA1-202ENST00000398452 SSBP2P81877 361 aaPredicted RBP11.2□□□□□ -0.62
SKA1-202ENST00000398452 NHLH2Q02577 135 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 SLC38A11Q08AI6 406 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 EXOSC2Q13868 293 aaKnown RBP11.2□□□□□ -0.62
SKA1-202ENST00000398452 ZNF266Q14584 549 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 C9orf62Q8N4C0 152 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 OR5C1Q8NGR4 320 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 TMEM158Q8WZ71 300 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 SLC35E1Q96K37 410 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 P2RX4Q99571 388 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 SMIM3Q9BZL3 60 aa11.2□□□□□ -0.62
SKA1-202ENST00000398452 LOC100996750A0A140TA64 210 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 A0A1B0GW64 132 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 RNF222A6NCQ9 220 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 BCL2L11O43521 198 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 SCGB2A1O75556 95 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 CRYGCP07315 174 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 CTRB1P17538 263 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 CXCL2P19875 107 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 CLINT1Q14677 625 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 LGALSLQ3ZCW2 172 aaPredicted RBP11.19□□□□□ -0.62
SKA1-202ENST00000398452 CTRB2Q6GPI1 263 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 SCGB1C1Q8TD33 95 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 GGACTQ9BVM4 153 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 ZNF471Q9BX82 626 aaPredicted RBP11.19□□□□□ -0.62
SKA1-202ENST00000398452 KRTAP4-6Q9BYQ5 205 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 FBXL17Q9UF56 701 aa11.19□□□□□ -0.62
SKA1-202ENST00000398452 CRIP2P52943 208 aaPredicted RBP11.18□□□□□ -0.62
SKA1-202ENST00000398452 DLK1P80370 383 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 AKR1C1Q04828 323 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 OPCMLQ14982 345 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 BSXQ3C1V8 233 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 STPG2Q8N412 459 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 ATP5SQ99766 215 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 TMEM147Q9BVK8 224 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 ESM1Q9NQ30 184 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 UQCC1Q9NVA1 299 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 LINC00527Q9UJ94 153 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 ZNF580Q9UK33 172 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 FBXO7Q9Y3I1 522 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 TNCP24821 2201 aa11.18□□□□□ -0.62
SKA1-202ENST00000398452 LINC01548A6NM66 108 aa11.17□□□□□ -0.62
SKA1-202ENST00000398452 G3V318 75 aa11.17□□□□□ -0.62
SKA1-202ENST00000398452 H3BUA1 57 aa11.17□□□□□ -0.62
SKA1-202ENST00000398452 JTBO76095 146 aa11.17□□□□□ -0.62
SKA1-202ENST00000398452 EGR2P11161 476 aaPredicted RBP11.17□□□□□ -0.62
SKA1-202ENST00000398452 GPX4P36969 197 aaPredicted RBP11.17□□□□□ -0.62
SKA1-202ENST00000398452 ASPHD1Q5U4P2 390 aa11.17□□□□□ -0.62
SKA1-202ENST00000398452 CACNG8Q8WXS5 425 aa11.17□□□□□ -0.62
SKA1-202ENST00000398452 ZNF702PQ9H963 129 aa11.17□□□□□ -0.62
SKA1-202ENST00000398452 FBN3Q75N90 2809 aa11.17□□□□□ -0.62
SKA1-202ENST00000398452 TET2Q6N021 2002 aaPredicted RBP11.16□□□□□ -0.62
SKA1-202ENST00000398452 PF4V1P10720 104 aa11.16□□□□□ -0.62
SKA1-202ENST00000398452 CD69Q07108 199 aa11.16□□□□□ -0.62
SKA1-202ENST00000398452 RAB31Q13636 194 aa11.16□□□□□ -0.62
SKA1-202ENST00000398452 KRTAP24-1Q3LI83 254 aa11.16□□□□□ -0.62
SKA1-202ENST00000398452 SLC16A13Q7RTY0 426 aa11.16□□□□□ -0.62
SKA1-202ENST00000398452 CENPVQ7Z7K6 275 aaPredicted RBP11.16□□□□□ -0.62
SKA1-202ENST00000398452 SLC51BQ86UW2 128 aa11.16□□□□□ -0.62
SKA1-202ENST00000398452 NOL4LQ96MY1 436 aaPredicted RBP11.16□□□□□ -0.62
SKA1-202ENST00000398452 SLA2Q9H6Q3 261 aa11.16□□□□□ -0.62
SKA1-202ENST00000398452 PSMB11A5LHX3 300 aa11.15□□□□□ -0.62
SKA1-202ENST00000398452 OR2J3O76001 311 aa11.15□□□□□ -0.62
SKA1-202ENST00000398452 MT-CO2P00403 227 aa11.15□□□□□ -0.62
SKA1-202ENST00000398452 TRGV3P03979 118 aa11.15□□□□□ -0.62
SKA1-202ENST00000398452 TPT1P13693 172 aaKnown RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 73.3 ms