RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 PEX7O00628 323 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 DNAL4O96015 105 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 C19orf24Q9BVV8 132 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 LCTP09848 1927 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 GAGE10A6NGK3 116 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 NPIPB13A6NJU9 1138 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 IGHV1-46P01743 117 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 ZP1P60852 638 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 GATAD1Q8WUU5 269 aa13.03□□□□□ -0.32
PTPRF-201ENST00000359947 FBLN7Q53RD9 439 aa13.02□□□□□ -0.32
PTPRF-201ENST00000359947 C11orf68Q9H3H3 251 aaKnown RBP13.02□□□□□ -0.32
PTPRF-201ENST00000359947 A0A0G2JNJ9 132 aa13.02□□□□□ -0.32
PTPRF-201ENST00000359947 Q9UFV3 132 aa13.02□□□□□ -0.32
PTPRF-201ENST00000359947 MRPS18CQ9Y3D5 142 aaKnown RBP13.02□□□□□ -0.32
PTPRF-201ENST00000359947 WBP1Q96G27 269 aa13.02□□□□□ -0.33
PTPRF-201ENST00000359947 DOCK4Q8N1I0 1966 aa13.02□□□□□ -0.33
PTPRF-201ENST00000359947 TRAV8-6A0A0B4J262 113 aa13.02□□□□□ -0.33
PTPRF-201ENST00000359947 K7ERU9 68 aa13.02□□□□□ -0.33
PTPRF-201ENST00000359947 NTN3O00634 580 aaPredicted RBP13.02□□□□□ -0.33
PTPRF-201ENST00000359947 ANK1P16157 1881 aa13.02□□□□□ -0.33
PTPRF-201ENST00000359947 TTC32Q5I0X7 151 aa13.02□□□□□ -0.33
PTPRF-201ENST00000359947 STPG2Q8N412 459 aa13.02□□□□□ -0.33
PTPRF-201ENST00000359947 H2BFSP57053 126 aa13.02□□□□□ -0.33
PTPRF-201ENST00000359947 WNK3Q9BYP7 1800 aa13.02□□□□□ -0.33
PTPRF-201ENST00000359947 FGFBP3Q8TAT2 258 aa13.02□□□□□ -0.33
PTPRF-201ENST00000359947 FREM3P0C091 2139 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 RAMP3O60896 148 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 BEND2Q8NDZ0 799 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 Q9H3A6 140 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 PQLC2LA1A4F0 135 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 CRPP02741 224 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 MT-ND6P03923 174 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 ERVK11-1P61568 191 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 COPS9Q8WXC6 57 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 KIAA2026Q5HYC2 2103 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 MIR17HGQ75NE6 70 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 ZNF436-AS1Q8NC38 126 aaPredicted RBP13.01□□□□□ -0.33
PTPRF-201ENST00000359947 MRPS16Q9Y3D3 137 aaKnown RBP13.01□□□□□ -0.33
PTPRF-201ENST00000359947 GFI1BQ5VTD9 330 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 DEFB104AQ8WTQ1 72 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 TBL2Q9Y4P3 447 aaKnown RBP13.01□□□□□ -0.33
PTPRF-201ENST00000359947 TMEM42Q69YG0 159 aa13.01□□□□□ -0.33
PTPRF-201ENST00000359947 SLC17A3O00476 420 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 FABP2P12104 132 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 FOXG1P55316 489 aaPredicted RBP13□□□□□ -0.33
PTPRF-201ENST00000359947 FXYD7P58549 80 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 PSMG4Q5JS54 123 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 PPIFP30405 207 aaKnown RBP13□□□□□ -0.33
PTPRF-201ENST00000359947 UCP3P55916 312 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 GNG5P63218 68 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 SP5Q6BEB4 398 aaPredicted RBP13□□□□□ -0.33
PTPRF-201ENST00000359947 OR9G4Q8NGQ1 327 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 TXNDC17Q9BRA2 123 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 SCO2A0A1W2PP80 73 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 COL25A1Q9BXS0 654 aaPredicted RBP13□□□□□ -0.33
PTPRF-201ENST00000359947 PGPEP1Q9NXJ5 209 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 EFNA4P52798 201 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 OR11H4Q8NGC9 324 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 IGLV3-12A0A075B6K2 115 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 HBBP68871 147 aa13□□□□□ -0.33
PTPRF-201ENST00000359947 NYNRINQ9P2P1 1898 aaKnown RBP12.99□□□□□ -0.33
PTPRF-201ENST00000359947 LOC102723996A0A087X1L8 192 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 C19orf67A6NJJ6 358 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 CDX1P47902 265 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-201ENST00000359947 MORN2Q502X0 79 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 PAPPA-AS1Q5QFB9 102 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 GTF3AQ92664 365 aaKnown RBP12.99□□□□□ -0.33
PTPRF-201ENST00000359947 SCGB3A1Q96QR1 104 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 MPDZO75970 2070 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 LDLRAD4O15165 306 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 SELLP14151 372 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 IFITM3Q01628 133 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 ZNF660Q6AZW8 331 aaPredicted RBP12.99□□□□□ -0.33
PTPRF-201ENST00000359947 CBLN1P23435 193 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 KCNS1Q96KK3 526 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 DSCR9P59020 149 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 NDUFA3O95167 84 aa12.99□□□□□ -0.33
PTPRF-201ENST00000359947 PRELID3AQ96N28 172 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 NPDC1Q9NQX5 325 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-201ENST00000359947 IGHV3-73A0A0B4J1V6 119 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 RNF223E7ERA6 249 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 MLNRO43193 412 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 CRIM1Q9NZV1 1036 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 H3BUX3 64 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 ZNF329Q86UD4 541 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 HIST1H2BAQ96A08 127 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 WNK2Q9Y3S1 2297 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 C2orf68Q2NKX9 166 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 FOLR2P14207 255 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 PRR30Q53SZ7 412 aaPredicted RBP12.98□□□□□ -0.33
PTPRF-201ENST00000359947 MPTX1A8MV57 137 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 PAX8Q06710 450 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 FAM90A1Q86YD7 464 aa12.98□□□□□ -0.33
PTPRF-201ENST00000359947 SAMD13Q5VXD3 122 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 JKAMPQ9P055 326 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 LYZL4Q96KX0 146 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 FAM209BQ5JX69 171 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 TM2D1Q9BX74 207 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 ROS1P08922 2347 aa12.97□□□□□ -0.33
PTPRF-201ENST00000359947 JOSD1Q15040 202 aaPredicted RBP12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 123.2 ms