RNA–Protein interactions for RNA: ENST00000638142.2

SYNGAP1-227, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 2,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-227ENST00000638142 PQLC2Q6ZP29 291 aa16.47■□□□□ 0.23
SYNGAP1-227ENST00000638142 OR5AU1Q8NGC0 362 aa16.47■□□□□ 0.23
SYNGAP1-227ENST00000638142 LRFN3Q9BTN0 628 aa16.47■□□□□ 0.23
SYNGAP1-227ENST00000638142 TMEM208Q9BTX3 173 aa16.47■□□□□ 0.23
SYNGAP1-227ENST00000638142 C19orf24Q9BVV8 132 aa16.47■□□□□ 0.23
SYNGAP1-227ENST00000638142 DLEU1O43261 78 aa16.46■□□□□ 0.23
SYNGAP1-227ENST00000638142 SPRY3O43610 288 aa16.46■□□□□ 0.23
SYNGAP1-227ENST00000638142 GATA4P43694 442 aa16.46■□□□□ 0.23
SYNGAP1-227ENST00000638142 BAGE3Q86Y29 109 aa16.46■□□□□ 0.23
SYNGAP1-227ENST00000638142 BAGE2Q86Y30 109 aa16.46■□□□□ 0.23
SYNGAP1-227ENST00000638142 UPK2O00526 184 aa16.46■□□□□ 0.23
SYNGAP1-227ENST00000638142 CRYABP02511 175 aaKnown RBP16.46■□□□□ 0.23
SYNGAP1-227ENST00000638142 MT-ND6P03923 174 aa16.46■□□□□ 0.23
SYNGAP1-227ENST00000638142 MYOD1P15172 320 aa16.46■□□□□ 0.23
SYNGAP1-227ENST00000638142 OR5I1Q13606 314 aa16.46■□□□□ 0.23
SYNGAP1-227ENST00000638142 PNKDQ8N490 385 aa16.46■□□□□ 0.23
SYNGAP1-227ENST00000638142 M0R1B8 84 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 IRF2P14316 349 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 CRYBB3P26998 211 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 RTL8BQ17RB0 113 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 TMEM30BQ3MIR4 351 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 WDR73Q6P4I2 378 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 OR8I2Q8N0Y5 310 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 VAMP8Q9BV40 100 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 OSTCQ9NRP0 149 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 IGLV3-9A0A075B6K5 115 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 MBD3L4A6NDZ8 208 aaPredicted RBP16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 MBD3L3A6NE82 208 aaPredicted RBP16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 MBD3L5A6NJ08 208 aaPredicted RBP16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 COL8A2P25067 703 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 TAS2R45P59539 299 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 COX19Q49B96 90 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 TIMM23BQ5SRD1 257 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 FAM201AQ5SY85 155 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 MBD3L2Q8NHZ7 208 aaPredicted RBP16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 LINC00574Q9H8X3 128 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 RNF7Q9UBF6 113 aa16.45■□□□□ 0.22
SYNGAP1-227ENST00000638142 DSCAML1Q8TD84 2053 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 CDKN1AP38936 164 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 CX3CL1P78423 397 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 TIGITQ495A1 244 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 C2orf83Q53S99 150 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 STUMQ69YW2 141 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 M0R296 226 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 OR5G3P0C626 314 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 SRSF6Q13247 344 aaKnown RBP16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 C3orf36Q3SXR2 165 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 ALKBH2Q6NS38 261 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 ZNF503Q96F45 646 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 GOLT1BQ9Y3E0 138 aa16.44■□□□□ 0.22
SYNGAP1-227ENST00000638142 IGKV1OR2-108A0A075B7D4 117 aa16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 COMPP49747 757 aaPredicted RBP16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 SEM1Q6ZVN7 128 aa16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 ST6GALNAC3Q8NDV1 305 aa16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 SAMD10Q9BYL1 202 aa16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 DSCAMO60469 2012 aa16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 OR7C2O60412 319 aa16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 BRS3P32247 399 aa16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 GNG10P50151 68 aa16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 VN1R17PQ8TDU5 208 aa16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 SLC35D1Q9NTN3 355 aa16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 PAM16Q9Y3D7 125 aa16.43■□□□□ 0.22
SYNGAP1-227ENST00000638142 PRRC2CQ9Y520 2896 aaKnown RBP16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 ISLRO14498 428 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 TM4SF5O14894 197 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 FRMD6-AS1P0C7T7 363 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 DUX4L9Q6RFH8 374 aaPredicted RBP16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 VHLLQ6RSH7 139 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 SLC25A48Q6ZT89 311 aaKnown RBP16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 DOLPP1Q86YN1 238 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 OR1L8Q8NGR8 309 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 OR5B3Q8NH48 314 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 FAM122AQ96E09 287 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 TANC2Q9HCD6 1990 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 PCNX2A6NKB5 2137 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 A0A1W2PRE2 83 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 CT45A6P0DMU7 189 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 CT45A5P0DMU8 189 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 CT45A7P0DMV0 189 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 MOB3BQ86TA1 216 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 GAFA1Q96PS6 74 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 GCM1Q9NP62 436 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 BET1LQ9NYM9 111 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 NAT8BQ9UHF3 227 aa16.42■□□□□ 0.22
SYNGAP1-227ENST00000638142 TEX50A0A1B0GTY4 177 aa16.41■□□□□ 0.22
SYNGAP1-227ENST00000638142 GGTLC3B5MD39 225 aa16.41■□□□□ 0.22
SYNGAP1-227ENST00000638142 F2Z2F3 143 aa16.41■□□□□ 0.22
SYNGAP1-227ENST00000638142 RPUSD1Q9UJJ7 312 aaKnown RBP16.41■□□□□ 0.22
SYNGAP1-227ENST00000638142 A6NNC1 897 aa16.41■□□□□ 0.22
SYNGAP1-227ENST00000638142 IGKV1-16P04430 117 aa16.41■□□□□ 0.22
SYNGAP1-227ENST00000638142 OR10J3Q5JRS4 329 aa16.41■□□□□ 0.22
SYNGAP1-227ENST00000638142 RNASE7Q9H1E1 156 aaKnown RBP16.41■□□□□ 0.22
SYNGAP1-227ENST00000638142 SRRM4A7MD48 611 aaKnown RBP16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 GPX1P07203 203 aa16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 C8orf88P0DMB2 117 aa16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 SIGLECL1Q8N7X8 197 aa16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 MRPL32Q9BYC8 188 aaKnown RBP16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 GNB4Q9HAV0 340 aa16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 LPAR2Q9HBW0 351 aa16.4■□□□□ 0.22
SYNGAP1-227ENST00000638142 LINC00614P0C842 121 aa16.4■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 131 ms