RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 ZNF616Q08AN1 781 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 FXYD3Q14802 87 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 AANATQ16613 207 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 CLLU1Q5K131 121 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 HIST2H2BCQ6DN03 193 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 TEPPQ6URK8 271 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 CLEC9AQ6UXN8 241 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 DPPA3Q6W0C5 159 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 RBMS3Q6XE24 437 aaKnown RBP4.96□□□□□ -1.62
LIG3-206ENST00000586058 TMEM182Q6ZP80 229 aaPredicted RBP4.96□□□□□ -1.62
LIG3-206ENST00000586058 MAPK1IP1LQ8NDC0 245 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 OR2G3Q8NGZ4 309 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 TMED6Q8WW62 240 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 SSMEM1Q8WWF3 244 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 OR4C12Q96R67 309 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 SSX3Q99909 188 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 GINS3Q9BRX5 216 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 PSMG3Q9BT73 122 aaPredicted RBP4.96□□□□□ -1.62
LIG3-206ENST00000586058 C11orf1Q9H5F2 150 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 NPVFQ9HCQ7 196 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 NDUFA4L2Q9NRX3 87 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 TIMM9Q9Y5J7 89 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 CFAP46Q8IYW2 2715 aa4.96□□□□□ -1.62
LIG3-206ENST00000586058 A0A096LNT2 108 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 C15orf62A8K5M9 175 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 NUDT19A8MXV4 375 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 H3BUX3 64 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 TMEM50AO95807 157 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 MT-CO2P00403 227 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 HLA-DRB1P01911 266 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 HBE1P02100 147 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 IL6RP08887 468 aaPredicted RBP4.95□□□□□ -1.62
LIG3-206ENST00000586058 IGHV4-38-2P0DP08 117 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 SPP1P10451 314 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 HIST1H1BP16401 226 aaKnown RBP4.95□□□□□ -1.62
LIG3-206ENST00000586058 CD24P25063 80 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 CNTFRP26992 372 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 ATP6V0CP27449 155 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 SULT1A2P50226 295 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 SERF2P84101 59 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 EBI3Q14213 229 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 C9orf152Q5JTZ5 239 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 ZNF562Q6V9R5 426 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 SLC16A13Q7RTY0 426 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 S100A7AQ86SG5 101 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 ZNF114Q8NC26 417 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 LFNGQ8NES3 379 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 CACNG8Q8WXS5 425 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 TAF15Q92804 592 aaKnown RBP eCLIP4.95□□□□□ -1.62
LIG3-206ENST00000586058 RBMXL1Q96E39 390 aaKnown RBP4.95□□□□□ -1.62
LIG3-206ENST00000586058 SAT2Q96F10 170 aaPredicted RBP4.95□□□□□ -1.62
LIG3-206ENST00000586058 MISP3Q96FF7 219 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 TMEM68Q96MH6 324 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 RBM14Q96PK6 669 aaKnown RBP4.95□□□□□ -1.62
LIG3-206ENST00000586058 WDR61Q9GZS3 305 aaKnown RBP4.95□□□□□ -1.62
LIG3-206ENST00000586058 MEGF9Q9H1U4 602 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 PARP11Q9NR21 331 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 TPSG1Q9NRR2 321 aa4.95□□□□□ -1.62
LIG3-206ENST00000586058 USP9XQ93008 2570 aaPredicted RBP4.95□□□□□ -1.62
LIG3-206ENST00000586058 ZFYVE26Q68DK2 2539 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 TSPAN15O95858 294 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 IFNA1P01562 189 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 REG1AP05451 166 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 CRYGBP07316 175 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 RNASE2P10153 161 aaKnown RBP4.94□□□□□ -1.62
LIG3-206ENST00000586058 BTF3P20290 206 aaKnown RBP4.94□□□□□ -1.62
LIG3-206ENST00000586058 S100A7P31151 101 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 GPX4P36969 197 aaPredicted RBP4.94□□□□□ -1.62
LIG3-206ENST00000586058 CD69Q07108 199 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 ECSCRQ19T08 205 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 ACOT6Q3I5F7 207 aaPredicted RBP4.94□□□□□ -1.62
LIG3-206ENST00000586058 TMEM41BQ5BJD5 291 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 FAM74A1Q5RGS3 127 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 C10orf55Q5SWW7 151 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 BTNL8Q6UX41 500 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 Q6ZRG5 221 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 DYNAPQ8N1N2 210 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 Q8N3U1 123 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 Q8N6K4 173 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 WFDC11Q8NEX6 87 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 OR10W1Q8NGF6 305 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 OR1P1Q8NH06 330 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 FAM213BQ8TBF2 198 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 PBDC1Q9BVG4 233 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 NPCDR1Q9BY65 106 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 CYTL1Q9NRR1 136 aa4.94□□□□□ -1.62
LIG3-206ENST00000586058 F11RQ9Y624 299 aaKnown RBP4.94□□□□□ -1.62
LIG3-206ENST00000586058 A0A1W2PPV4 95 aa4.93□□□□□ -1.62
LIG3-206ENST00000586058 IGLC7A0M8Q6 106 aa4.93□□□□□ -1.62
LIG3-206ENST00000586058 ZFP92A6NM28 416 aa4.93□□□□□ -1.62
LIG3-206ENST00000586058 NPIPB5A8MRT5 1133 aa4.93□□□□□ -1.62
LIG3-206ENST00000586058 CD5LO43866 347 aa4.93□□□□□ -1.62
LIG3-206ENST00000586058 CFDP00746 253 aaPredicted RBP4.93□□□□□ -1.62
LIG3-206ENST00000586058 APELAP0DMC3 54 aa4.93□□□□□ -1.62
LIG3-206ENST00000586058 MYOD1P15172 320 aa4.93□□□□□ -1.62
LIG3-206ENST00000586058 ELLP55199 621 aaPredicted RBP4.93□□□□□ -1.62
LIG3-206ENST00000586058 SELENOTP62341 195 aa4.93□□□□□ -1.62
LIG3-206ENST00000586058 CX3CL1P78423 397 aa4.93□□□□□ -1.62
LIG3-206ENST00000586058 RUNX1Q01196 453 aa4.93□□□□□ -1.62
LIG3-206ENST00000586058 WT1-ASQ06250 92 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 225.2 ms