RNA–Protein interactions for RNA: ENST00000577636.5

SS18-207, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 580 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-207ENST00000577636 SLC38A11Q08AI6 406 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 TPTE2P1Q5T6R2 138 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 MINOS1Q5TGZ0 78 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 OR8G2PQ6IF36 304 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 TMEM86BQ8N661 226 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 HSD17B11Q8NBQ5 300 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 OR4P4Q8NGL7 312 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 RNF5Q99942 180 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 GINS3Q9BRX5 216 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 TMEM14BQ9NUH8 114 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 TCF19Q9Y242 345 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 MINOS1-NBL1R4GNA1 71 aa8.13□□□□□ -1.11
SS18-207ENST00000577636 A0A1W2PN81 502 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 ZNF705EA8MWA4 302 aaPredicted RBP8.12□□□□□ -1.11
SS18-207ENST00000577636 FBXO24O75426 580 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 PRH1P02810 166 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 CHRNA7P36544 502 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 SNCAP37840 140 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 SPINK9Q5DT21 86 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 FAM74A1Q5RGS3 127 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 TMEM14EPQ6UXP3 125 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 Q6ZSV7 163 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 COMMD7Q86VX2 200 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 PUSL1Q8N0Z8 303 aaKnown RBP8.12□□□□□ -1.11
SS18-207ENST00000577636 STPG2Q8N412 459 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 TMEM167AQ8TBQ9 72 aa8.12□□□□□ -1.11
SS18-207ENST00000577636 SAT2Q96F10 170 aaPredicted RBP8.12□□□□□ -1.11
SS18-207ENST00000577636 TBL2Q9Y4P3 447 aaKnown RBP8.12□□□□□ -1.11
SS18-207ENST00000577636 TRAV3A0A0B4J244 114 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 A0A0U1RQK1 487 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 RPS10-NUDT3A0A1W2PQS6 291 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 NUDT19A8MXV4 375 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 ODF3BA8MYP8 253 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 UMAD1C9J7I0 102 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 LY6LH3BQJ8 138 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 IFNA4P05014 189 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 NMBP08949 121 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 CD1BP29016 333 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 MAS1LP35410 378 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 UBE2E1P51965 193 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 ERHP84090 104 aaKnown RBP8.11□□□□□ -1.11
SS18-207ENST00000577636 PRCDQ00LT1 54 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 DIAPH2-AS1Q14236 149 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 PLGLAQ15195 96 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 BEAN1Q3B7T3 259 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 MMD2Q8IY49 270 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 ZNF709Q8N972 641 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 TEX45Q8NA69 505 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 OR1L8Q8NGR8 309 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 MRAPQ8TCY5 172 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 BSCL2Q96G97 398 aaPredicted RBP8.11□□□□□ -1.11
SS18-207ENST00000577636 CITED4Q96RK1 184 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 TBX15Q96SF7 602 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 TMEM147Q9BVK8 224 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 SIRPDQ9H106 197 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 ARV1Q9H2C2 271 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 WFDC1Q9HC57 220 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 UQCC1Q9NVA1 299 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 MED9Q9NWA0 146 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 KIAA1456Q9P272 454 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 FAM96BQ9Y3D0 163 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 NOTCH1P46531 2555 aa8.11□□□□□ -1.11
SS18-207ENST00000577636 IGHV3-72A0A0B4J1Y9 119 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 IGHV1-69DA0A0B4J2H0 117 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 TEX50A0A1B0GTY4 177 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 A0A1W2PRD5 423 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 A0A1W2PRF3 423 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 A0A1W2PRM7 423 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 SRRM4A7MD48 611 aaKnown RBP8.1□□□□□ -1.11
SS18-207ENST00000577636 C17orf112F2Z3M2 114 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 SLC25A17O43808 307 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 IGHV1-69P01742 117 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 IL6RP08887 468 aaPredicted RBP8.1□□□□□ -1.11
SS18-207ENST00000577636 SPP1P10451 314 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 NPY1RP25929 384 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 BRS3P32247 399 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 IER3P46695 156 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 CAMLGP49069 296 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 SULT1A2P50226 295 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 SUB1P53999 127 aaKnown RBP eCLIP8.1□□□□□ -1.11
SS18-207ENST00000577636 RAB2AP61019 212 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 RPL15P61313 204 aaKnown RBP8.1□□□□□ -1.11
SS18-207ENST00000577636 PRB3Q04118 309 aaPredicted RBP8.1□□□□□ -1.11
SS18-207ENST00000577636 ETV3LQ6ZN32 361 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 C11orf44Q8N8P7 122 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 SLC24A4Q8NFF2 622 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 OR2G3Q8NGZ4 309 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 OR2T10Q8NGZ9 312 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 PCNPQ8WW12 178 aaKnown RBP8.1□□□□□ -1.11
SS18-207ENST00000577636 OR4C12Q96R67 309 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 GGACTQ9BVM4 153 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 PARD6GQ9BYG4 376 aaPredicted RBP8.1□□□□□ -1.11
SS18-207ENST00000577636 HILPDAQ9Y5L2 63 aa8.1□□□□□ -1.11
SS18-207ENST00000577636 DOCK11Q5JSL3 2073 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 BTBD17A6NE02 478 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 TEX46H3BTG2 121 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 FGF16O43320 207 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 SOX15O60248 233 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 TSPAN9O75954 239 aa8.09□□□□□ -1.11
SS18-207ENST00000577636 MOSP00540 346 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 56.4 ms