RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SLC35B1P78383 322 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 WT1-ASQ06250 92 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 C19orf54Q5BKX5 351 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 C9orf152Q5JTZ5 239 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 PVRIGQ6DKI7 326 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 CTRB2Q6GPI1 263 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 RBMXL1Q96E39 390 aaKnown RBP12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 HYLS1Q96M11 299 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 MAGT1Q9H0U3 335 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 TNFRSF19Q9NS68 423 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 THYN1Q9P016 225 aa12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 STRAPQ9Y3F4 350 aaKnown RBP12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 F11RQ9Y624 299 aaKnown RBP12.62□□□□□ -0.39
PRPF40A-212ENST00000545856 A0A1B0GW64 132 aa12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 EGR2P11161 476 aaPredicted RBP12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 NPY1RP25929 384 aa12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 LRRC37A5PQ49AS3 106 aa12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 ARSJQ5FYB0 599 aaPredicted RBP12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 TMEM14EPQ6UXP3 125 aa12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 STX12Q86Y82 276 aa12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 STPG2Q8N412 459 aa12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 OR4F5Q8NH21 305 aa12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 RNASEH2CQ8TDP1 164 aaKnown RBP12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 WDR89Q96FK6 387 aaPredicted RBP12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 SLA2Q9H6Q3 261 aa12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 PSENENQ9NZ42 101 aa12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 MBD2Q9UBB5 411 aa12.61□□□□□ -0.39
PRPF40A-212ENST00000545856 ATRQ13535 2644 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 TRAV14DV4A0A0A6YYC5 116 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 E7EUB6 86 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 G3V3Q6 166 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 FBXO24O75426 580 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 OPN1MWP04001 364 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 OPN1MW2P0DN77 364 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 OPN1MW3P0DN78 364 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 EXOSC2Q13868 293 aaKnown RBP12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 ZNF345Q14585 488 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 FAM209BQ5JX69 171 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 UNQ5815/PRO19632Q6UWF5 114 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 Q6ZSV7 163 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 INO80EQ8NBZ0 244 aaPredicted RBP12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 LFNGQ8NES3 379 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 RNF126Q9BV68 326 aa12.6□□□□□ -0.39
PRPF40A-212ENST00000545856 H0YIZ8 118 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 IFNA10P01566 189 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 RNASE2P10153 161 aaKnown RBP12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 MYOD1P15172 320 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 PAX9P55771 341 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 HBG1P69891 147 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 HBG2P69892 147 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 ZFP69Q49AA0 526 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 OR10W1Q8NGF6 305 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 DCUN1D4Q92564 292 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 AQP10Q96PS8 301 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 DUX5Q96PT3 197 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 ATP6V0BQ99437 205 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 GGACTQ9BVM4 153 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 OR5AC2Q9NZP5 309 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 FBXO7Q9Y3I1 522 aa12.59□□□□□ -0.39
PRPF40A-212ENST00000545856 FNDC10F2Z333 226 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 TMEM50AO95807 157 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 OR8U8P0C7N1 319 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 IAPPP10997 89 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 AREGP15514 252 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 PPIFP30405 207 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 SULT1A1P50225 295 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 CAV2P51636 162 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 CFHR3Q02985 330 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 ECSCRQ19T08 205 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 ASPHD1Q5U4P2 390 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 ETFRF1Q6IPR1 90 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 ZNF546Q86UE3 836 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 CACNG8Q8WXS5 425 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 PINX1Q96BK5 328 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 P2RX4Q99571 388 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 FAM103A1Q9BTL3 118 aaKnown RBP12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 TNFSF18Q9UNG2 199 aa12.58□□□□□ -0.4
PRPF40A-212ENST00000545856 RPS10-NUDT3A0A1W2PQS6 291 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 NXPH3O95157 252 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 IGHG4P01861 327 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 ELANEP08246 267 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 HKR1P10072 659 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 DEFA4P12838 97 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 OR2F1Q13607 317 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 SPANXN5Q5MJ07 72 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 ACOT7LQ6ZUV0 252 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 TMEM252Q8N6L7 170 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 WNT10AQ9GZT5 417 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 SERTAD4Q9NUC0 356 aa12.57□□□□□ -0.4
PRPF40A-212ENST00000545856 IGLV11-55A0A075B6I3 123 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 FXYD6-FXYD2A0A087WZ82 144 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 FAM223BA6NKX1 122 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 C15orf62A8K5M9 175 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 IGLV1-40P01703 118 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 C4BPBP20851 252 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 RPL12P30050 165 aaKnown RBP12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 GPX4P36969 197 aaPredicted RBP12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 FOXE3Q13461 319 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 ATP6V1FQ16864 119 aa12.56□□□□□ -0.4
PRPF40A-212ENST00000545856 SPINK9Q5DT21 86 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 78.9 ms