RNA–Protein interactions for RNA: ENST00000538570.5

COL4A6-208, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,528 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-208ENST00000538570 IFI27L2Q9H2X8 130 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 TRAV9-2A0A087WT02 112 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 TRACP01848 142 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 TRGV3P03979 118 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 RASL11AQ6T310 242 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 ZNF479Q96JC4 524 aa8.43□□□□□ -1.06
COL4A6-208ENST00000538570 ZNF638Q14966 1978 aaKnown RBP8.43□□□□□ -1.06
COL4A6-208ENST00000538570 FOCADQ5VW36 1801 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 RBMY1BA6NDE4 496 aaKnown RBP8.42□□□□□ -1.06
COL4A6-208ENST00000538570 RBMY1EA6NEQ0 496 aaKnown RBP8.42□□□□□ -1.06
COL4A6-208ENST00000538570 CGAP01215 116 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 RBMY1DP0C7P1 496 aaKnown RBP8.42□□□□□ -1.06
COL4A6-208ENST00000538570 RBMY1A1P0DJD3 496 aaKnown RBP8.42□□□□□ -1.06
COL4A6-208ENST00000538570 RBMY1CP0DJD4 496 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 CD69Q07108 199 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 RPL39P5Q59GN2 51 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 ADAMTSL5Q6ZMM2 481 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 SCARF2Q96GP6 870 aaPredicted RBP8.42□□□□□ -1.06
COL4A6-208ENST00000538570 RPRMQ9NS64 109 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 IGHV3-35A0A0C4DH35 117 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 FOXH1O75593 365 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 COX6A1P12074 109 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 AZU1P20160 251 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 ADMP35318 185 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 CRYBA2P53672 197 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 PSMG4Q5JS54 123 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 SDF2L1Q9HCN8 221 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 TSSC4Q9Y5U2 329 aaPredicted RBP8.42□□□□□ -1.06
COL4A6-208ENST00000538570 IGKV1D-42A0A075B6H8 117 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 A0A1B0GUT8 65 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 ATP5J2P56134 94 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 LRTM2Q8N967 370 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 RPP21Q9H633 154 aaKnown RBP8.42□□□□□ -1.06
COL4A6-208ENST00000538570 TRAV12-3A0A0B4J271 114 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 MSGN1A6NI15 193 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 J3QW42 95 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 IGHV3-23P01764 117 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 SELLP14151 372 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 HIST1H4AP62805 103 aaKnown RBP8.42□□□□□ -1.06
COL4A6-208ENST00000538570 S100A7L2Q5SY68 101 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 SCO2A0A1W2PP80 73 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 NDUFC2O95298 119 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 FHL5Q5TD97 284 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 HS3ST3B1Q9Y662 390 aa8.42□□□□□ -1.06
COL4A6-208ENST00000538570 TRAV9-1A0A075B6T8 112 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 B5MCH6 92 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 IFITM1P13164 125 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 CDKN1BP46527 198 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 STARD6P59095 220 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 SP7Q8TDD2 431 aaPredicted RBP8.41□□□□□ -1.06
COL4A6-208ENST00000538570 CCL19Q99731 98 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 IGHV3-66A0A0C4DH42 116 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 B9A039 149 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 CEACAM1P13688 526 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 CDCP2Q5VXM1 449 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 TRBV7-9A0A0J9YWB2 115 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 CNTFRP26992 372 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 LINC01590Q5TEZ4 76 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 Q6AWC8 147 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 OSR1Q8TAX0 266 aaPredicted RBP8.41□□□□□ -1.06
COL4A6-208ENST00000538570 NPFFR1Q9GZQ6 430 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 IGFBP2P18065 325 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 TFF3Q07654 80 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 GFI1BQ5VTD9 330 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 OR5AN1Q8NGI8 311 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 ZNF646O15015 1829 aaPredicted RBP8.41□□□□□ -1.06
COL4A6-208ENST00000538570 IGHV3OR16-13A0A075B7E8 117 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 IGHV3OR16-10A0A075B7F0 116 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 IGHV3-74A0A0B4J1X5 117 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 NDUFA3O95167 84 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 UMODP07911 640 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 POU2AF1Q16633 256 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 LAIR2Q6ISS4 152 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 ZNF436-AS1Q8NC38 126 aaPredicted RBP8.41□□□□□ -1.06
COL4A6-208ENST00000538570 DUX3Q96PT4 197 aa8.41□□□□□ -1.06
COL4A6-208ENST00000538570 SRSF8Q9BRL6 282 aaKnown RBP8.41□□□□□ -1.06
COL4A6-208ENST00000538570 GAGE1Q13065 139 aa8.4□□□□□ -1.06
COL4A6-208ENST00000538570 HEPN1Q6WQI6 88 aa8.4□□□□□ -1.06
COL4A6-208ENST00000538570 TRAV2A0A0B4J234 112 aa8.4□□□□□ -1.06
COL4A6-208ENST00000538570 ACP7Q6ZNF0 438 aa8.4□□□□□ -1.06
COL4A6-208ENST00000538570 FOXA2Q9Y261 457 aaPredicted RBP8.4□□□□□ -1.06
COL4A6-208ENST00000538570 DICER1Q9UPY3 1922 aaKnown RBP8.4□□□□□ -1.06
COL4A6-208ENST00000538570 IZUMO1RA6ND01 250 aa8.4□□□□□ -1.06
COL4A6-208ENST00000538570 NPIPB13A6NJU9 1138 aa8.4□□□□□ -1.06
COL4A6-208ENST00000538570 GAGE5Q13069 117 aa8.4□□□□□ -1.06
COL4A6-208ENST00000538570 GAGE6Q13070 117 aa8.4□□□□□ -1.06
COL4A6-208ENST00000538570 ZNRF1Q8ND25 227 aa8.4□□□□□ -1.06
COL4A6-208ENST00000538570 KIF13BQ9NQT8 1826 aa8.4□□□□□ -1.06
COL4A6-208ENST00000538570 COL5A3P25940 1745 aaPredicted RBP8.4□□□□□ -1.06
COL4A6-208ENST00000538570 TM4SF5O14894 197 aa8.4□□□□□ -1.06
COL4A6-208ENST00000538570 EIF4EBP2Q13542 120 aaPredicted RBP8.4□□□□□ -1.06
COL4A6-208ENST00000538570 TRAV14DV4A0A0A6YYC5 116 aa8.4□□□□□ -1.07
COL4A6-208ENST00000538570 RNF222A6NCQ9 220 aa8.4□□□□□ -1.07
COL4A6-208ENST00000538570 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP8.4□□□□□ -1.07
COL4A6-208ENST00000538570 SMIM10L1P0DMW3 83 aa8.4□□□□□ -1.07
COL4A6-208ENST00000538570 WFDC12Q8WWY7 111 aa8.4□□□□□ -1.07
COL4A6-208ENST00000538570 SMIM10Q96HG1 83 aa8.4□□□□□ -1.07
COL4A6-208ENST00000538570 TM2D1Q9BX74 207 aa8.4□□□□□ -1.07
COL4A6-208ENST00000538570 FBXL7Q9UJT9 491 aa8.4□□□□□ -1.07
COL4A6-208ENST00000538570 SLC25A45Q8N413 288 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 131.3 ms