RNA–Protein interactions for RNA: ENST00000514096.5

LIMCH1-219, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,543 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-219ENST00000514096 TMEM128Q5BJH2 165 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 CD300LDQ6UXZ3 194 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 KLHDC1Q8N7A1 406 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 LGALS14Q8TCE9 139 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 FAM206AQ9NX38 181 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 ZNF581Q9P0T4 197 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 ZNRD1Q9P1U0 126 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 CTSZQ9UBR2 303 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 HHLA2Q9UM44 414 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 SIRT4Q9Y6E7 314 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 ARL2-SNX15V9GYD0 113 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 IGHV3-43A0A0B4J1X8 118 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 IQCF6A8MYZ5 107 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 M0QYG6 137 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 DHRS3O75911 302 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 IFNA1P01562 189 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 TYMSP04818 313 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 OR5H8P0DN80 308 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 IGHV3-43DP0DP04 118 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 TAS2R31P59538 309 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 LRRC75A-AS1Q8N1F1 130 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 S100A16Q96FQ6 103 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 RARRES2Q99969 163 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 ZMAT3Q9HA38 289 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 MRPS18AQ9NVS2 196 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 SLC25A10Q9UBX3 287 aaPredicted RBP6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 RCL1Q9Y2P8 373 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 TRAV38-1A0A0B4J264 116 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 OOEPA6NGQ2 149 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 CLDN34H7C241 214 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 BCL3P20749 454 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 IL13RA1P78552 427 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 SRSF4Q08170 494 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 GAGE5Q13069 117 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 GAGE6Q13070 117 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 KHDC1LQ5JSQ8 128 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 UBE2NLQ5JXB2 153 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 SIGLECL1Q8N7X8 197 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 CMTM2Q8TAZ6 248 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 RNASEH2CQ8TDP1 164 aaKnown RBP6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 RNF125Q96EQ8 232 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 C1orf43Q9BWL3 253 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 RBKSQ9H477 322 aa6.5□□□□□ -1.37
LIMCH1-219ENST00000514096 SH2D7A6NKC9 451 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 HMGB3O15347 200 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 OR2A4O95047 310 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 CA1P00915 261 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 NRN1LQ496H8 165 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 NEIL1Q96FI4 390 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 OR2A7Q96R45 310 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 FGF23Q9GZV9 251 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 CNOT2Q9NZN8 540 aaKnown RBP6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 VAX2Q9UIW0 290 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 TANC2Q9HCD6 1990 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 SHISA3A0PJX4 238 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 SNRPGP15A8MWD9 76 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 DSCR9P59020 149 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 BSXQ3C1V8 233 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 C5orf47Q569G3 176 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 LRRC10Q5BKY1 277 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 SLC36A1Q7Z2H8 476 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 C1QL4Q86Z23 238 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 MKXQ8IYA7 352 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 H1FOOQ8IZA3 346 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 TVP23CQ96ET8 276 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 GNG13Q9P2W3 67 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 CDC42EP3Q9UKI2 254 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 OR51B2Q9Y5P1 312 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 INSIG2Q9Y5U4 225 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 TNFRSF18Q9Y5U5 241 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 KITLGP21583 273 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 GABRA5P31644 462 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 LGALS4P56470 323 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 RELBQ01201 579 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 RPEL1Q2QD12 228 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 LRRC75BQ2VPJ9 315 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 PIGYQ3MUY2 71 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 DNLZQ5SXM8 178 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 C1orf229Q6ZS94 237 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 C1QL2Q7Z5L3 287 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 C1orf174Q8IYL3 243 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 TMEM256Q8N2U0 113 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 TMEM116Q8NCL8 245 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 RTN4IP1Q8WWV3 396 aaPredicted RBP6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 IL1F10Q8WWZ1 152 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 OR10C1Q96KK4 312 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 FAM234AQ9H0X4 552 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 PPDPFQ9H3Y8 114 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 TRAPPC2LQ9UL33 140 aa6.49□□□□□ -1.37
LIMCH1-219ENST00000514096 GAGE12HA6NDE8 117 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 CRLF1O75462 422 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 LIMS3P0CW19 117 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 LIMS4P0CW20 117 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 OR3A4PP47883 348 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 REG1BP48304 166 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 TPPP2P59282 170 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 RPL31P62899 125 aaKnown RBP6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 PSG9Q00887 426 aa6.48□□□□□ -1.37
LIMCH1-219ENST00000514096 FOXL2NBQ6ZUU3 175 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms