RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 C12orf29Q8N999 325 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 ZNF439Q8NDP4 499 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 C11orf40Q8WZ69 217 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 PPP1R14BQ96C90 147 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 OR51I1Q9H343 314 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 V9GYY5 206 aaPredicted RBP0.78□□□□□ -2.28
VPS50-219ENST00000495039 EVC2Q86UK5 1308 aa0.78□□□□□ -2.28
VPS50-219ENST00000495039 TRBV20OR9-2A0A075B6H5 130 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 TRAV14DV4A0A0A6YYC5 116 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 A0A0J9YY10 115 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 A0A1B0GX78 115 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 FUOMA2VDF0 154 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 ACOX3O15254 700 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 DCTN3O75935 186 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 ISG15P05161 165 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 CALB1P05937 261 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 ZNF80P51504 273 aaPredicted RBP0.77□□□□□ -2.29
VPS50-219ENST00000495039 ITGB3BPQ13352 177 aaPredicted RBP0.77□□□□□ -2.29
VPS50-219ENST00000495039 RGS21Q2M5E4 152 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 CDKL4Q5MAI5 379 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 IBA57Q5T440 356 aaKnown RBP0.77□□□□□ -2.29
VPS50-219ENST00000495039 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.77□□□□□ -2.29
VPS50-219ENST00000495039 C10orf67Q8IYJ2 551 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 ZNF565Q8N9K5 539 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 WFDC11Q8NEX6 87 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 MCFD2Q8NI22 146 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 OR5AC2Q9NZP5 309 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 LSM5Q9Y4Y9 91 aaKnown RBP0.77□□□□□ -2.29
VPS50-219ENST00000495039 TTC21AQ8NDW8 1320 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 ADCY9O60503 1353 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 C9orf84Q5VXU9 1444 aa0.77□□□□□ -2.29
VPS50-219ENST00000495039 MYO3BQ8WXR4 1341 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 INMT-MINDY4F8WBC2 141 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 KCNK1O00180 336 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 GEMIN2O14893 280 aaKnown RBP0.76□□□□□ -2.29
VPS50-219ENST00000495039 RPP14O95059 124 aaKnown RBP0.76□□□□□ -2.29
VPS50-219ENST00000495039 TNNC2P02585 160 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 NEFHP12036 1026 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 OMPP47874 163 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 RAB5BP61020 215 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 CTAG1AP78358 180 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 CCL20P78556 96 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 PRB3Q04118 309 aaPredicted RBP0.76□□□□□ -2.29
VPS50-219ENST00000495039 STX5Q13190 355 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 SPA17Q15506 151 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 GUK1Q16774 197 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 TEX36Q5VZQ5 186 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 CD200R1LQ6Q8B3 271 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 Q6ZS49 121 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 LINC00471Q8N535 108 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 TMEM106AQ96A25 262 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 OPTNQ96CV9 577 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 PAIP2Q9BPZ3 127 aaKnown RBP0.76□□□□□ -2.29
VPS50-219ENST00000495039 WDR61Q9GZS3 305 aaKnown RBP0.76□□□□□ -2.29
VPS50-219ENST00000495039 TRABDQ9H4I3 376 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 XPNPEP1Q9NQW7 623 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 C22orf24Q9Y442 160 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 ARFGEF3Q5TH69 2177 aa0.76□□□□□ -2.29
VPS50-219ENST00000495039 IFNA5P01569 189 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 CLPSP04118 112 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 SHBGP04278 402 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 RNASE3P12724 160 aaKnown RBP0.75□□□□□ -2.29
VPS50-219ENST00000495039 NKX2-5P52952 324 aaPredicted RBP0.75□□□□□ -2.29
VPS50-219ENST00000495039 TCL1AP56279 114 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 MRPS25P82663 173 aaKnown RBP0.75□□□□□ -2.29
VPS50-219ENST00000495039 MRPS15P82914 257 aaKnown RBP0.75□□□□□ -2.29
VPS50-219ENST00000495039 IFITM2Q01629 132 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 ZNF846Q147U1 533 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 AKIRIN2Q53H80 203 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 HIST2H3PS2Q5TEC6 136 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 AADACL3Q5VUY0 350 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 SPOPLQ6IQ16 392 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 SFXN4Q6P4A7 337 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 TRAPPC5Q8IUR0 188 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 OR51D1Q8NGF3 324 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 OR4C6Q8NH72 309 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 MRPL30Q8TCC3 161 aaKnown RBP0.75□□□□□ -2.29
VPS50-219ENST00000495039 RASSF5Q8WWW0 418 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 AQP3Q92482 292 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 PTH2Q96A98 100 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 IMP4Q96G21 291 aaKnown RBP0.75□□□□□ -2.29
VPS50-219ENST00000495039 CCDC42Q96M95 316 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 CISHQ9NSE2 258 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 CKLFQ9UBR5 152 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 GUCA1BQ9UMX6 200 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 MICAL3Q7RTP6 2002 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 AHNAKQ09666 5890 aaKnown RBP0.75□□□□□ -2.29
VPS50-219ENST00000495039 ROS1P08922 2347 aa0.75□□□□□ -2.29
VPS50-219ENST00000495039 MAP3K5Q99683 1374 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 ANAPC1Q9H1A4 1944 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 KIF13BQ9NQT8 1826 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 IGKV1-9A0A0C4DH69 117 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 TGOLN2O43493 480 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 ATP5HO75947 161 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 OR5F1O95221 314 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 HIST1H2BOP23527 126 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 HIST1H2BBP33778 126 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 CDKN2CP42773 168 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 SULT1A1P50225 295 aa0.74□□□□□ -2.29
VPS50-219ENST00000495039 HIST1H2BDP58876 126 aa0.74□□□□□ -2.29
Retrieved 100 of 20,778 RNA–protein pairs in 66.3 ms