RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 ZNF114Q8NC26 417 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 CCL28Q9NRJ3 127 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 J3QR89 54 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 MGPP08493 103 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 PMCHL1Q16048 86 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 TDRG1Q3Y452 100 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 PRSS57Q6UWY2 283 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 OR10D3Q8NH80 312 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 FLYWCH2Q96CP2 140 aaKnown RBP4.43□□□□□ -1.7
SYNE1-220ENST00000471834 FOXB1Q99853 325 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 PLSCR4Q9NRQ2 329 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 OR1A1Q9P1Q5 309 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 OR4C46A6NHA9 309 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 S1PR2O95136 353 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 ID1P41134 155 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 FOXL2P58012 376 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 FAM78BQ5VT40 261 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 Q6ZS92 163 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 FAM169BQ8N8A8 192 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 DNAJC4Q9NNZ3 241 aa4.43□□□□□ -1.7
SYNE1-220ENST00000471834 SOX21Q9Y651 276 aaPredicted RBP4.43□□□□□ -1.7
SYNE1-220ENST00000471834 IGKV3-7A0A075B6H7 116 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 NEURL1O76050 574 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 RPLP1P05386 114 aaKnown RBP4.42□□□□□ -1.7
SYNE1-220ENST00000471834 MAGEA5P43359 124 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF788Q6ZQV5 615 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 FA2HQ7L5A8 372 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 ATP5L2Q7Z4Y8 100 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 SPACA3Q8IXA5 215 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF503Q96F45 646 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 HS3ST6Q96QI5 342 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 LAMTOR2Q9Y2Q5 125 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 EXPH5Q8NEV8 1989 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 M0R2Z0 102 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 SLC38A11Q08AI6 406 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 WDR73Q6P4I2 378 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 C16orf82Q7Z2V1 217 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 OR1L4Q8NGR5 311 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 CACNA1CQ13936 2221 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 GON4LQ3T8J9 2241 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 FREM3P0C091 2139 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 KIR2DS2P43631 304 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 UQCRFS1P47985 274 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 TNFAIP6P98066 277 aaPredicted RBP4.42□□□□□ -1.7
SYNE1-220ENST00000471834 TNXAQ16473 311 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 TREML4Q6UXN2 200 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 C20orf204Q6ZNR8 217 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 WFDC3Q8IUB2 231 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 CXXC4Q9H2H0 198 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 AAMDCQ9H7C9 122 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 ST20Q9HBF5 79 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 ADAMTS20P59510 1910 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 FAM87AP0C7U9 286 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 IL11RAQ14626 422 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 GRAMD2BQ96HH9 432 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 F5H697 171 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 CCL25O15444 150 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 NGFP01138 241 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 APOHP02749 345 aaPredicted RBP4.42□□□□□ -1.7
SYNE1-220ENST00000471834 Q8TCH9 128 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 CBLN4Q9NTU7 201 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 SMIM27A0A1W2PRY6 76 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 DUTP33316 252 aaKnown RBP4.42□□□□□ -1.7
SYNE1-220ENST00000471834 PCP4P48539 62 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 PET117Q6UWS5 81 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 FAM214BQ7L5A3 538 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 NHLRC2Q8NBF2 726 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF586Q9NXT0 402 aa4.42□□□□□ -1.7
SYNE1-220ENST00000471834 IGHV1OR15-9A0A0B4J2B8 117 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF32P17041 273 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 WNT5AP41221 380 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 P2RY6Q15077 328 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 MRPL54Q6P161 138 aaKnown RBP4.41□□□□□ -1.7
SYNE1-220ENST00000471834 TMEM37Q8WXS4 190 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 AP5S1Q9NUS5 200 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF492Q9P255 531 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 CACNG5Q9UF02 275 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 FER1L5A0AVI2 2057 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 ODAMA1E959 279 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 SNAI3Q3KNW1 292 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 PRNTQ86SH4 94 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 C8orf31Q8N9H6 132 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 GGTLC1Q9BX51 225 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 IL17BQ9UHF5 180 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 COX11Q9Y6N1 276 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 NTN3O00634 580 aaPredicted RBP4.41□□□□□ -1.7
SYNE1-220ENST00000471834 CD33P20138 364 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 ACP1P24666 158 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 TSPOP30536 169 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 RPL13AP40429 203 aaKnown RBP4.41□□□□□ -1.7
SYNE1-220ENST00000471834 DLL3Q9NYJ7 618 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 FAM181BA6NEQ2 426 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 C15orf65H3BRN8 121 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 HAND1O96004 215 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 TWIST1Q15672 202 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 C18orf32Q8TCD1 76 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 ZNF837Q96EG3 531 aaPredicted RBP4.41□□□□□ -1.7
SYNE1-220ENST00000471834 MS4A10Q96PG2 267 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 ZMAT4Q9H898 229 aa4.41□□□□□ -1.7
SYNE1-220ENST00000471834 RP1P56715 2156 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms