RNA–Protein interactions for RNA: ENST00000471439.1

VPS13A-210, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-210ENST00000471439 LRRN3E7EW58 273 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 RFPL4AL1F8VTS6 287 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 H7C1H1 209 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 NDUFAB1O14561 156 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 TOR1AO14656 332 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 GATBO75879 557 aaKnown RBP2.18□□□□□ -2.06
VPS13A-210ENST00000471439 F2RP25116 425 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 ALDH3A1P30838 453 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 CX3CR1P49238 355 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 EDDM3BP56851 147 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 RGS8P57771 180 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-210ENST00000471439 PRR3P79522 188 aaKnown RBP2.18□□□□□ -2.06
VPS13A-210ENST00000471439 TRAM2Q15035 370 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 ZNF684Q5T5D7 378 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 CENPQQ7L2Z9 268 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-210ENST00000471439 CMC1Q7Z7K0 106 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 LGI3Q8N145 548 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 OR10Z1Q8NGY1 313 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 OR2T10Q8NGZ9 312 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 OR8S1Q8NH09 359 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 C15orf40Q8WUR7 153 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 MCUR1Q96AQ8 359 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 OR52E6Q96RD3 313 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 ZNF436Q9C0F3 470 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-210ENST00000471439 ACTR3CQ9C0K3 210 aaPredicted RBP2.18□□□□□ -2.06
VPS13A-210ENST00000471439 IQCGQ9H095 443 aaKnown RBP2.18□□□□□ -2.06
VPS13A-210ENST00000471439 MTFP1Q9UDX5 166 aa2.18□□□□□ -2.06
VPS13A-210ENST00000471439 IGKV1D-42A0A075B6H8 117 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 TRAV36DV7A0A075B6V5 113 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 IGHV3OR16-8A0A075B7F1 116 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 TRAV25A0A0B4J276 109 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 SERTM2A0A1B0GWG4 89 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 COLCA2A8K830 154 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 M0R2T5 61 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 REG1AP05451 166 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 CT45A6P0DMU7 189 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 CT45A5P0DMU8 189 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 CT45A7P0DMV0 189 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 MYL2P10916 166 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 SSTR5P35346 364 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 EMP1P54849 157 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 UBE2MP61081 183 aaKnown RBP2.17□□□□□ -2.06
VPS13A-210ENST00000471439 COPZ1P61923 177 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 DEFA5Q01523 94 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 AESQ08117 197 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 C2orf54Q08AI8 447 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 SMUG1Q53HV7 270 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 CT45A1Q5HYN5 189 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 UBE2UQ5VVX9 321 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 C10orf107Q8IVU9 208 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 ARRDC1Q8N5I2 433 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 ZNF709Q8N972 641 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 C11orf72Q8NBR9 251 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 OR4C5Q8NGB2 326 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 CT45A3Q8NHU0 189 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 ANKRD60Q9BZ19 345 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 TMEM38AQ9H6F2 299 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 TBC1D24Q9ULP9 559 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 NUBP2Q9Y5Y2 271 aa2.17□□□□□ -2.06
VPS13A-210ENST00000471439 DSTQ03001 7570 aaKnown RBP2.16□□□□□ -2.06
VPS13A-210ENST00000471439 IGLV4-60A0A075B6I1 120 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 TMEM223A0PJW6 202 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 ZNF736B4DX44 427 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-210ENST00000471439 POLR3GO15318 223 aaPredicted RBP2.16□□□□□ -2.06
VPS13A-210ENST00000471439 RBFOX2O43251 390 aaKnown RBP eCLIP2.16□□□□□ -2.06
VPS13A-210ENST00000471439 HLA-DRB1P01911 266 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 KRT16P08779 473 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 CGB3P0DN86 165 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 CTLA4P16410 223 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 CDK2P24941 298 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 RAB7AP51149 207 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 CNBPP62633 177 aaKnown RBP2.16□□□□□ -2.06
VPS13A-210ENST00000471439 BASP1P80723 227 aaKnown RBP2.16□□□□□ -2.06
VPS13A-210ENST00000471439 ZNF266Q14584 549 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 ESRGQ1W209 222 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 ORMDL2Q53FV1 153 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 ACTBL2Q562R1 376 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 SPIN4Q56A73 249 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 MRPL2Q5T653 305 aaKnown RBP2.16□□□□□ -2.06
VPS13A-210ENST00000471439 MRPL21Q7Z2W9 205 aaKnown RBP2.16□□□□□ -2.06
VPS13A-210ENST00000471439 NAA40Q86UY6 237 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 OR8B12Q8NGG6 310 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 OR52E5Q8NH55 327 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 OR51E1Q8TCB6 317 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 APH1BQ8WW43 257 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 GTF2H4Q92759 462 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 TMEM230Q96A57 120 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 TIMM17AQ99595 171 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 HMG20AQ9NP66 347 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 TAS2R5Q9NYW4 299 aa2.16□□□□□ -2.06
VPS13A-210ENST00000471439 MRPS16Q9Y3D3 137 aaKnown RBP2.16□□□□□ -2.06
VPS13A-210ENST00000471439 IGLV1-50A0A075B6I6 118 aa2.15□□□□□ -2.07
VPS13A-210ENST00000471439 IGHV1-3A0A0C4DH29 117 aa2.15□□□□□ -2.07
VPS13A-210ENST00000471439 TMEM213A2RRL7 107 aa2.15□□□□□ -2.07
VPS13A-210ENST00000471439 GABRPO00591 440 aa2.15□□□□□ -2.07
VPS13A-210ENST00000471439 CCNKO75909 580 aa2.15□□□□□ -2.07
VPS13A-210ENST00000471439 FGF4P08620 206 aa2.15□□□□□ -2.07
VPS13A-210ENST00000471439 LINC00869P0C866 280 aa2.15□□□□□ -2.07
VPS13A-210ENST00000471439 MSR1P21757 451 aa2.15□□□□□ -2.07
VPS13A-210ENST00000471439 GALP22466 123 aa2.15□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 76.7 ms