RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 IFNA7P01567 189 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 IGKV1-39P01597 117 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 IGKV1D-39P04432 117 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 HSPB1P04792 205 aaKnown RBP9.17□□□□□ -0.94
VPS52-213ENST00000461743 APELAP0DMC3 54 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 ZP3P21754 424 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 INPP1P49441 399 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 AKR1C2P52895 323 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 ZNF343Q6P1L6 599 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 TEX261Q6UWH6 196 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 REC114Q7Z4M0 266 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 ZNF429Q86V71 674 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 COMMD7Q86VX2 200 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 FAM219AQ8IW50 185 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 CASTOR1Q8WTX7 329 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 GALNT14Q96FL9 552 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 TMEM56Q96MV1 263 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 C7orf50Q9BRJ6 194 aaKnown RBP9.17□□□□□ -0.94
VPS52-213ENST00000461743 RTBDNQ9BSG5 229 aaPredicted RBP9.17□□□□□ -0.94
VPS52-213ENST00000461743 NDUFA4L2Q9NRX3 87 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 OR51B2Q9Y5P1 312 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 U3KQ87 197 aa9.17□□□□□ -0.94
VPS52-213ENST00000461743 TEX13DA0A0J9YY54 714 aaPredicted RBP9.16□□□□□ -0.94
VPS52-213ENST00000461743 C7orf66A4D0T2 115 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 CGB1A6NKQ9 187 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 E7EUB6 86 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 CDS2O95674 445 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 IGHV3-11P01762 117 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 OR5AC1P0C628 307 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 P0C879 139 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 ANXA3P12429 323 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 IGLL1P15814 213 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 SRPXP78539 464 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 RHOGP84095 191 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 RBMS2Q15434 407 aaKnown RBP9.16□□□□□ -0.94
VPS52-213ENST00000461743 ZNF57Q68EA5 555 aaPredicted RBP9.16□□□□□ -0.94
VPS52-213ENST00000461743 SGPP2Q8IWX5 399 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 ZNF680Q8NEM1 530 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 OR1L6Q8NGR2 347 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 OR4A16Q8NH70 328 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 ZNF431Q8TF32 576 aaPredicted RBP9.16□□□□□ -0.94
VPS52-213ENST00000461743 RBPMSQ93062 196 aaKnown RBP9.16□□□□□ -0.94
VPS52-213ENST00000461743 IL22RA2Q969J5 263 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 DUX3Q96PT4 197 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 OR5B12Q96R08 314 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 THYN1Q9P016 225 aa9.16□□□□□ -0.94
VPS52-213ENST00000461743 IGLV11-55A0A075B6I3 123 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 IGHV4OR15-8A0A075B7B6 117 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 A0A087WW49 117 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 TEX50A0A1B0GTY4 177 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 RPS10-NUDT3A0A1W2PQS6 291 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 IGKV1-5P01602 117 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 DEFA4P12838 97 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 AREGP15514 252 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 INSL3P51460 131 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 UBE2MP61081 183 aaKnown RBP9.15□□□□□ -0.94
VPS52-213ENST00000461743 PRCDQ00LT1 54 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 ATP5G2Q06055 141 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 EGFEM1PQ0D2K5 195 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 EXOSC2Q13868 293 aaKnown RBP9.15□□□□□ -0.94
VPS52-213ENST00000461743 OXLD1Q5BKU9 147 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 C9orf66Q5T8R8 295 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 ZNF114Q8NC26 417 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 RRNAD1Q96FB5 475 aaKnown RBP9.15□□□□□ -0.94
VPS52-213ENST00000461743 ALX4Q9H161 411 aaPredicted RBP9.15□□□□□ -0.94
VPS52-213ENST00000461743 MED28Q9H204 178 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 PEF1Q9UBV8 284 aaKnown RBP9.15□□□□□ -0.94
VPS52-213ENST00000461743 CACFD1Q9UGQ2 172 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 KCNIP3Q9Y2W7 256 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 TMEM56-RWDD3S4R434 201 aa9.15□□□□□ -0.94
VPS52-213ENST00000461743 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.14□□□□□ -0.95
VPS52-213ENST00000461743 INS-IGF2F8WCM5 200 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 OVOL1O14753 267 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 MYOD1P15172 320 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 C4BPBP20851 252 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 DEFA6Q01524 100 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 C15orf32Q32M92 178 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 AARDQ4LEZ3 155 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 PXDC1Q5TGL8 231 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 C1QL4Q86Z23 238 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 RNASE11Q8TAA1 199 aaKnown RBP9.14□□□□□ -0.95
VPS52-213ENST00000461743 GLYATL2Q8WU03 294 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 TMEM230Q96A57 120 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 CXorf58Q96LI9 332 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 FANCD2OSQ96PS1 177 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 ATP6V0BQ99437 205 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 UBQLN2Q9UHD9 624 aa9.14□□□□□ -0.95
VPS52-213ENST00000461743 F11RQ9Y624 299 aaKnown RBP9.14□□□□□ -0.95
VPS52-213ENST00000461743 TRBV7-1A0A0A6YYK4 115 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 DUXBA0A1W2PPF3 345 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 SEC14L6B5MCN3 397 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 RBMXL2O75526 392 aaKnown RBP9.13□□□□□ -0.95
VPS52-213ENST00000461743 OR2J3O76001 311 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 ATF4P18848 351 aaPredicted RBP9.13□□□□□ -0.95
VPS52-213ENST00000461743 HOXD3P31249 432 aaPredicted RBP9.13□□□□□ -0.95
VPS52-213ENST00000461743 RAB14P61106 215 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 HSPE1P61604 102 aaKnown RBP9.13□□□□□ -0.95
VPS52-213ENST00000461743 WT1-ASQ06250 92 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 FCN2Q15485 313 aa9.13□□□□□ -0.95
VPS52-213ENST00000461743 SP6Q3SY56 376 aa9.13□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 91.2 ms