RNA–Protein interactions for RNA: ENST00000425048.1

LINC01040-201, Transcript of long intergenic non-protein coding RNA 1040, humanhuman

TSL 2 BASIC

Gene LINC01040, Length 666 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01040-201ENST00000425048 AK6Q9Y3D8 172 aaKnown RBP2.16□□□□□ -2.06
LINC01040-201ENST00000425048 CSDC2Q9Y534 153 aaKnown RBP2.16□□□□□ -2.06
LINC01040-201ENST00000425048 TSSC4Q9Y5U2 329 aaPredicted RBP2.16□□□□□ -2.06
LINC01040-201ENST00000425048 DOCK11Q5JSL3 2073 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 A0A096LNJ9 63 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP2.15□□□□□ -2.07
LINC01040-201ENST00000425048 A0A0G2JMM0 328 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 C13orf42A0A1B0GVH6 325 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 A0A1W2PPB8 328 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 FAM230AA0A1W2PPH8 454 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 TSPAN11A1L157 253 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 PSMB11A5LHX3 300 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 MAP1LC3B2A6NCE7 125 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 ARL5CA6NH57 179 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 C17orf51A8MQB3 221 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 KIR3DP1A8MWS1 328 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 EEF1E1-BLOC1S5C9J1V9 151 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 K7EP34 96 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 RAB29O14966 203 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 CD5LO43866 347 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 PDE6DO43924 150 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 KLF8O95600 359 aaPredicted RBP2.15□□□□□ -2.07
LINC01040-201ENST00000425048 HBZP02008 142 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 CD3DP04234 171 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 CD55P08174 381 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 TACSTD2P09758 323 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 ZNF708P17019 499 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 PPIBP23284 216 aaKnown RBP2.15□□□□□ -2.07
LINC01040-201ENST00000425048 AQP1P29972 269 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 CMPK1P30085 196 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 CFHR2P36980 270 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 DNASE1L1P49184 302 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 ATP5IP56385 69 aaPredicted RBP2.15□□□□□ -2.07
LINC01040-201ENST00000425048 TPPP2P59282 170 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 RND3P61587 244 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 ACVR1Q04771 509 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 UNC119Q13432 240 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 IGFBP7Q16270 282 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 GABRA6Q16445 453 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 LINC00483Q53H64 154 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 TMEM41BQ5BJD5 291 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 TMEM69Q5SWH9 247 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 BVES-AS1Q5T3Y7 98 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 ZNF880Q6PDB4 577 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 ARL9Q6T311 187 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 OPN5Q6U736 354 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 DPPA3Q6W0C5 159 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 LINC00696Q6ZRV3 163 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 C19orf35Q6ZS72 473 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 COX15Q7KZN9 410 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 ACOT1Q86TX2 421 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 HIST2H2ABQ8IUE6 130 aaPredicted RBP2.15□□□□□ -2.07
LINC01040-201ENST00000425048 CLECL1Q8IZS7 167 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 ZDHHC22Q8N966 263 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 MORN4Q8NDC4 146 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 OR52R1Q8NGF1 315 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 OR4D11Q8NGI4 311 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 OR5A2Q8NGI9 324 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 OR51G1Q8NGK1 321 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 OR13C9Q8NGT0 318 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 OR13G1Q8NGZ3 307 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 OR4A5Q8NH83 315 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 STAG3L4Q8TBR4 150 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 RPS4Y2Q8TD47 263 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 ZNF418Q8TF45 676 aaPredicted RBP2.15□□□□□ -2.07
LINC01040-201ENST00000425048 TMEM37Q8WXS4 190 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 PSMF1Q92530 271 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 MAL2Q969L2 176 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 DDIT4LQ96D03 193 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 S100A16Q96FQ6 103 aaKnown RBP2.15□□□□□ -2.07
LINC01040-201ENST00000425048 TRIB3Q96RU7 358 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 P2RX4Q99571 388 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 HSPB9Q9BQS6 159 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 NIPSNAP3BQ9BS92 247 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 NDFIP1Q9BT67 221 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 PSMG3Q9BT73 122 aaPredicted RBP2.15□□□□□ -2.07
LINC01040-201ENST00000425048 EFCAB11Q9BUY7 163 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 TPPP3Q9BW30 176 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 MAP1LC3BQ9GZQ8 125 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 PARP12Q9H0J9 701 aaKnown RBP2.15□□□□□ -2.07
LINC01040-201ENST00000425048 LPAR5Q9H1C0 372 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 MFSD1Q9H3U5 465 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 PPDPFQ9H3Y8 114 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 FAM124BQ9H5Z6 455 aaPredicted RBP2.15□□□□□ -2.07
LINC01040-201ENST00000425048 MRPL16Q9NX20 251 aaKnown RBP2.15□□□□□ -2.07
LINC01040-201ENST00000425048 HHLA2Q9UM44 414 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 NPIPA1Q9UND3 350 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 SCN10AQ9Y5Y9 1956 aa2.15□□□□□ -2.07
LINC01040-201ENST00000425048 PHF3Q92576 2039 aaKnown RBP2.14□□□□□ -2.07
LINC01040-201ENST00000425048 TRAV38-1A0A0B4J264 116 aa2.14□□□□□ -2.07
LINC01040-201ENST00000425048 TMEM213A2RRL7 107 aa2.14□□□□□ -2.07
LINC01040-201ENST00000425048 C15orf65H3BRN8 121 aa2.14□□□□□ -2.07
LINC01040-201ENST00000425048 TAPBPO15533 448 aa2.14□□□□□ -2.07
LINC01040-201ENST00000425048 ARL6IP5O75915 188 aa2.14□□□□□ -2.07
LINC01040-201ENST00000425048 SFT2D2O95562 160 aa2.14□□□□□ -2.07
LINC01040-201ENST00000425048 CPSF4O95639 269 aaKnown RBP2.14□□□□□ -2.07
LINC01040-201ENST00000425048 HRASP01112 189 aa2.14□□□□□ -2.07
LINC01040-201ENST00000425048 IFNA1P01562 189 aa2.14□□□□□ -2.07
LINC01040-201ENST00000425048 HLA-AP01891 365 aaKnown RBP2.14□□□□□ -2.07
LINC01040-201ENST00000425048 REG1AP05451 166 aa2.14□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms