RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 A0A1W2PPE3 182 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 A0A1W2PPV4 95 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 UPK2O00526 184 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 RRHO14718 337 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 CXCL1P09341 107 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 RPS16P62249 146 aaKnown RBP12.06□□□□□ -0.48
USP4-203ENST00000415188 FABP9Q0Z7S8 132 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 ZNF674Q2M3X9 581 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 DUX4L9Q6RFH8 374 aaPredicted RBP12.06□□□□□ -0.48
USP4-203ENST00000415188 C1orf229Q6ZS94 237 aaPredicted RBP12.06□□□□□ -0.48
USP4-203ENST00000415188 ZNF833PQ6ZTB9 187 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 VKORC1L1Q8N0U8 176 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 C8orf31Q8N9H6 132 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 MAPK1IP1LQ8NDC0 245 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 OR4F5Q8NH21 305 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 LEAP2Q969E1 77 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 FAM210BQ96KR6 192 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 OR4F4Q96R69 305 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 GGTLC1Q9BX51 225 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 TMPRSS5Q9H3S3 457 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 MS4A5Q9H3V2 200 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 SLC35D1Q9NTN3 355 aa12.06□□□□□ -0.48
USP4-203ENST00000415188 SLC25A10Q9UBX3 287 aaPredicted RBP12.06□□□□□ -0.48
USP4-203ENST00000415188 LSM4Q9Y4Z0 139 aaKnown RBP12.06□□□□□ -0.48
USP4-203ENST00000415188 ABCA2Q9BZC7 2435 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 PPIAL4EA0A075B759 164 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 PPIAL4DF5H284 164 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 NDUFS7O75251 213 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 PPIAL4FP0DN26 164 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 NDUFB7P17568 137 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 PRCDQ00LT1 54 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 CLEC12BQ2HXU8 276 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 BSXQ3C1V8 233 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 ZNF343Q6P1L6 599 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 OSR1Q8TAX0 266 aaPredicted RBP12.05□□□□□ -0.48
USP4-203ENST00000415188 TMEM170AQ8WVE7 144 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 ANAPC16Q96DE5 110 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 MGST2Q99735 147 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 PARLQ9H300 379 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 SAP30LQ9HAJ7 183 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 BET1LQ9NYM9 111 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 PLCE1Q9P212 2302 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 PPIAL4AQ9Y536 164 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 OR51B2Q9Y5P1 312 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 PXMP4Q9Y6I8 212 aa12.05□□□□□ -0.48
USP4-203ENST00000415188 INAFM1C9JVW0 142 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 RNF223E7ERA6 249 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 TMEM178BH3BS89 294 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 PAGE4O60829 102 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 YIF1AO95070 293 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 CXorf1O96002 111 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 IGHV3-7P01780 117 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 IGHV4-39P01824 125 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 APOA2P02652 100 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 CT45A6P0DMU7 189 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 CT45A5P0DMU8 189 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 CT45A7P0DMV0 189 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 GNG10P50151 68 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 HNF4GQ14541 408 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 ADIRFQ15847 76 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 TEPPQ6URK8 271 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 NANPQ8TBE9 248 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 ZNF714Q96N38 554 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 PLEKHA3Q9HB20 300 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 HIVEP2P31629 2446 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 JMJD1CQ15652 2540 aa12.04□□□□□ -0.48
USP4-203ENST00000415188 TGIF2-C20orf24A0A0A6YYL0 155 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 C11orf94C9JXX5 98 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 HMGB3O15347 200 aaKnown RBP12.03□□□□□ -0.48
USP4-203ENST00000415188 TMPRSS2O15393 492 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 STAG3L2P0CL84 134 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 STAG3L3P0CL85 134 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 HOXA5P20719 270 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 S100PP25815 95 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 RPL29P47914 159 aaKnown RBP12.03□□□□□ -0.48
USP4-203ENST00000415188 RPL23P62829 140 aaKnown RBP12.03□□□□□ -0.48
USP4-203ENST00000415188 RPL31P62899 125 aaKnown RBP12.03□□□□□ -0.48
USP4-203ENST00000415188 CCL8P80075 99 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 KRTAP1-1Q07627 177 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 UTF1Q5T230 341 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 IQCF2Q8IXL9 164 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 ABHD12Q8N2K0 398 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 LINC00311Q8N616 119 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 OR5B3Q8NH48 314 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 ZNF596Q8TC21 504 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 RPUSD4Q96CM3 377 aaKnown RBP12.03□□□□□ -0.48
USP4-203ENST00000415188 URGCP-MRPS24S4R325 110 aa12.03□□□□□ -0.48
USP4-203ENST00000415188 E7EQL1 145 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 INS-IGF2F8WCM5 200 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 TNFRSF13BO14836 293 aaPredicted RBP12.02□□□□□ -0.48
USP4-203ENST00000415188 LRRC10Q5BKY1 277 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 DTX2Q86UW9 622 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 PRIMA1Q86XR5 153 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 OR4A5Q8NH83 315 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 BTF3L4Q96K17 158 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 OR5B12Q96R08 314 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 PYGO2Q9BRQ0 406 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 CHODLQ9H9P2 273 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 DOK5Q9P104 306 aa12.02□□□□□ -0.48
USP4-203ENST00000415188 KAAG1Q9UBP8 84 aa12.02□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 96.9 ms