RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 SLC24A4Q8NFF2 622 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 TMEM68Q96MH6 324 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 MFFQ9GZY8 342 aa11.28□□□□□ -0.6
SKA1-202ENST00000398452 H0YIZ8 118 aa11.27□□□□□ -0.61
SKA1-202ENST00000398452 H3BP45 60 aa11.27□□□□□ -0.61
SKA1-202ENST00000398452 FAM157CP0CG43 387 aa11.27□□□□□ -0.61
SKA1-202ENST00000398452 OR13C7P0DN81 318 aa11.27□□□□□ -0.61
SKA1-202ENST00000398452 DEFA4P12838 97 aa11.27□□□□□ -0.61
SKA1-202ENST00000398452 LYL1P12980 280 aa11.27□□□□□ -0.61
SKA1-202ENST00000398452 RPL12P30050 165 aaKnown RBP11.27□□□□□ -0.61
SKA1-202ENST00000398452 AP2S1P53680 142 aaPredicted RBP11.27□□□□□ -0.61
SKA1-202ENST00000398452 FBLN7Q53RD9 439 aa11.27□□□□□ -0.61
SKA1-202ENST00000398452 ACOT7LQ6ZUV0 252 aa11.27□□□□□ -0.61
SKA1-202ENST00000398452 RNF126Q9BV68 326 aa11.27□□□□□ -0.61
SKA1-202ENST00000398452 PRSS22Q9GZN4 317 aa11.27□□□□□ -0.61
SKA1-202ENST00000398452 LYRM2Q9NU23 88 aaPredicted RBP11.27□□□□□ -0.61
SKA1-202ENST00000398452 IGHV7-81A0A0B4J1V7 117 aa11.26□□□□□ -0.61
SKA1-202ENST00000398452 A0A0D9SG52 128 aa11.26□□□□□ -0.61
SKA1-202ENST00000398452 FAM24AA6NFZ4 105 aa11.26□□□□□ -0.61
SKA1-202ENST00000398452 BOLA2-SMG1P6H3BVE0 249 aa11.26□□□□□ -0.61
SKA1-202ENST00000398452 IFNA4P05014 189 aa11.26□□□□□ -0.61
SKA1-202ENST00000398452 NPY1RP25929 384 aa11.26□□□□□ -0.61
SKA1-202ENST00000398452 HBG1P69891 147 aa11.26□□□□□ -0.61
SKA1-202ENST00000398452 HBG2P69892 147 aa11.26□□□□□ -0.61
SKA1-202ENST00000398452 OR2F1Q13607 317 aa11.26□□□□□ -0.61
SKA1-202ENST00000398452 OR1L6Q8NGR2 347 aa11.26□□□□□ -0.61
SKA1-202ENST00000398452 TNFSF18Q9UNG2 199 aa11.26□□□□□ -0.61
SKA1-202ENST00000398452 FBN1P35555 2871 aaKnown RBP11.26□□□□□ -0.61
SKA1-202ENST00000398452 KANTRA0A1W2PQU2 76 aa11.25□□□□□ -0.61
SKA1-202ENST00000398452 DNAJC9-AS1A6NH13 148 aa11.25□□□□□ -0.61
SKA1-202ENST00000398452 INS-IGF2F8WCM5 200 aa11.25□□□□□ -0.61
SKA1-202ENST00000398452 VDAC2P45880 294 aaPredicted RBP11.25□□□□□ -0.61
SKA1-202ENST00000398452 SRSF2Q01130 221 aaKnown RBP11.25□□□□□ -0.61
SKA1-202ENST00000398452 BAXQ07812 192 aa11.25□□□□□ -0.61
SKA1-202ENST00000398452 ECSCRQ19T08 205 aa11.25□□□□□ -0.61
SKA1-202ENST00000398452 UNQ5815/PRO19632Q6UWF5 114 aa11.25□□□□□ -0.61
SKA1-202ENST00000398452 OR10W1Q8NGF6 305 aa11.25□□□□□ -0.61
SKA1-202ENST00000398452 SGMS2Q8NHU3 365 aa11.25□□□□□ -0.61
SKA1-202ENST00000398452 DUX5Q96PT3 197 aa11.25□□□□□ -0.61
SKA1-202ENST00000398452 FAM103A1Q9BTL3 118 aaKnown RBP11.25□□□□□ -0.61
SKA1-202ENST00000398452 GON7Q9BXV9 100 aa11.25□□□□□ -0.61
SKA1-202ENST00000398452 DNHD1Q96M86 4753 aa11.25□□□□□ -0.61
SKA1-202ENST00000398452 STAB1Q9NY15 2570 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 SH2D7A6NKC9 451 aaPredicted RBP11.24□□□□□ -0.61
SKA1-202ENST00000398452 CLDN34H7C241 214 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 AP4M1O00189 453 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 CORTO00230 105 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 ATP6V0E1O15342 81 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 TCF21O43680 179 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 APELAP0DMC3 54 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 SULT1A1P50225 295 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 MRGPRG-AS1Q2M3A8 158 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 ETV3LQ6ZN32 361 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 LILRB2Q8N423 598 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 TMEM252Q8N6L7 170 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 LFNGQ8NES3 379 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 OR11H4Q8NGC9 324 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 OR10P1Q8NGE3 313 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 OR1S2Q8NGQ3 325 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 PINX1Q96BK5 328 aaKnown RBP11.24□□□□□ -0.61
SKA1-202ENST00000398452 AQP10Q96PS8 301 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 HSPB9Q9BQS6 159 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 HSPB11Q9Y547 144 aa11.24□□□□□ -0.61
SKA1-202ENST00000398452 ANK3Q12955 4377 aaKnown RBP11.23□□□□□ -0.61
SKA1-202ENST00000398452 IGLC7A0M8Q6 106 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 G3V3Q6 166 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 IGHG2P01859 326 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 REG1AP05451 166 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 METTL15P1P0C7V9 234 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 HKR1P10072 659 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 NKX2-5P52952 324 aaPredicted RBP11.23□□□□□ -0.61
SKA1-202ENST00000398452 PAX9P55771 341 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 HILS1P60008 231 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 RPL15P61313 204 aaKnown RBP11.23□□□□□ -0.61
SKA1-202ENST00000398452 BLCAPP62952 87 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 EWSR1Q01844 656 aaKnown RBP eCLIP11.23□□□□□ -0.61
SKA1-202ENST00000398452 ZNF345Q14585 488 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 C2orf83Q53S99 150 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 OR8G2PQ6IF36 304 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 SLC25A24Q6NUK1 477 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 TMEM217Q8N7C4 229 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 SPATA3Q8NHX4 192 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 ARL6Q9H0F7 186 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 ZNF355PQ9NSJ1 428 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 THYN1Q9P016 225 aa11.23□□□□□ -0.61
SKA1-202ENST00000398452 TRAV41A0A0B4J266 112 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 RPS10-NUDT3A0A1W2PQS6 291 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 TEX22C9J3V5 150 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 E7EUB6 86 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 TAAR5O14804 337 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 DFFBO76075 338 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 CST7O76096 145 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 S100A11P31949 105 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 EIF5AP63241 154 aaKnown RBP11.22□□□□□ -0.61
SKA1-202ENST00000398452 WT1-ASQ06250 92 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 AKIRIN2Q53H80 203 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 ETFRF1Q6IPR1 90 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 TMEM14EPQ6UXP3 125 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 OR2T6Q8NHC8 308 aa11.22□□□□□ -0.61
SKA1-202ENST00000398452 C11orf1Q9H5F2 150 aa11.22□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms