RNA–Protein interactions for RNA: ENST00000357008.6

CHD4-201, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CHD4, Length 6,496 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-201ENST00000357008 IGKV1-13P0DP09 117 aa12.48□□□□□ -0.41
CHD4-201ENST00000357008 FER1L6-AS1Q8NA97 138 aa12.48□□□□□ -0.41
CHD4-201ENST00000357008 Q9H3A6 140 aa12.48□□□□□ -0.41
CHD4-201ENST00000357008 FBXL15Q9H469 300 aa12.48□□□□□ -0.41
CHD4-201ENST00000357008 SHANK3Q9BYB0 1731 aa12.48□□□□□ -0.41
CHD4-201ENST00000357008 C1orf162Q8NEQ5 155 aaPredicted RBP12.48□□□□□ -0.41
CHD4-201ENST00000357008 RNASE7Q9H1E1 156 aaKnown RBP12.48□□□□□ -0.41
CHD4-201ENST00000357008 TMEM242Q9NWH2 141 aa12.48□□□□□ -0.41
CHD4-201ENST00000357008 ELOVL5Q9NYP7 299 aa12.48□□□□□ -0.41
CHD4-201ENST00000357008 FOXA2Q9Y261 457 aaPredicted RBP12.48□□□□□ -0.41
CHD4-201ENST00000357008 TRAV9-2A0A087WT02 112 aa12.48□□□□□ -0.41
CHD4-201ENST00000357008 SPTA1P02549 2419 aa12.48□□□□□ -0.41
CHD4-201ENST00000357008 LYPD3O95274 346 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 UBR3Q6ZT12 1888 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 IGKV1-9A0A0C4DH69 117 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 ATXN7O15265 892 aaPredicted RBP12.47□□□□□ -0.41
CHD4-201ENST00000357008 DPM3Q9P2X0 92 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 GDF15Q99988 308 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 C21orf62Q9NYP8 219 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 GATA2P23769 480 aaPredicted RBP12.47□□□□□ -0.41
CHD4-201ENST00000357008 PSG7Q13046 419 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 MBD3L1Q8WWY6 194 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 HIST1H2BLQ99880 126 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 OTOFQ9HC10 1997 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 IGHV3OR16-13A0A075B7E8 117 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 IGHV3-74A0A0B4J1X5 117 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.47□□□□□ -0.41
CHD4-201ENST00000357008 PAQR4Q8N4S7 273 aaPredicted RBP12.47□□□□□ -0.41
CHD4-201ENST00000357008 DUX5Q96PT3 197 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 DERL1Q9BUN8 251 aa12.47□□□□□ -0.41
CHD4-201ENST00000357008 H3BUT2 72 aa12.46□□□□□ -0.41
CHD4-201ENST00000357008 PLPPR1Q8TBJ4 325 aa12.46□□□□□ -0.41
CHD4-201ENST00000357008 OTORQ9NRC9 128 aa12.46□□□□□ -0.41
CHD4-201ENST00000357008 COLCA2A8K830 154 aa12.46□□□□□ -0.41
CHD4-201ENST00000357008 PRR32B1ATL7 298 aa12.46□□□□□ -0.41
CHD4-201ENST00000357008 C9orf172C9J069 976 aa12.46□□□□□ -0.41
CHD4-201ENST00000357008 C9JCJ5 164 aa12.46□□□□□ -0.41
CHD4-201ENST00000357008 ZNF837Q96EG3 531 aaPredicted RBP12.46□□□□□ -0.41
CHD4-201ENST00000357008 GFI1Q99684 422 aa12.46□□□□□ -0.41
CHD4-201ENST00000357008 TRBV24-1A0A075B6N3 115 aa12.46□□□□□ -0.41
CHD4-201ENST00000357008 IQCF6A8MYZ5 107 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 DCTN5Q9BTE1 182 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 A0A1W2PRE2 83 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 CA1P00915 261 aaPredicted RBP12.46□□□□□ -0.42
CHD4-201ENST00000357008 OR10J3Q5JRS4 329 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 FAM216BQ8N7L0 139 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 OR4X2Q8NGF9 303 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 OR13C6PQ8NH95 151 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 WBP1Q96G27 269 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 PIMREGQ9BSJ6 248 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 GNB1LQ9BYB4 327 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 CHODLQ9H9P2 273 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 WFDC1Q9HC57 220 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 FBXL7Q9UJT9 491 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 CEP290O15078 2479 aa12.46□□□□□ -0.42
CHD4-201ENST00000357008 CELA3AP09093 270 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 GAS1P54826 345 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 SIGLEC12Q96PQ1 595 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 ATAD5Q96QE3 1844 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 A0A087WV48 116 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 MUC21A0A0G2JKD1 596 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 MUC21A0A140T8X8 626 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 COL4A5P29400 1685 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 LY6EQ16553 131 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 MUC21Q5SSG8 566 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 TEX29Q8N6K0 151 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 MRPL20Q9BYC9 149 aaKnown RBP12.45□□□□□ -0.42
CHD4-201ENST00000357008 TNFRSF18Q9Y5U5 241 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 NAPSAO96009 420 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 UPK2O00526 184 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 YPEL1O60688 119 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 APOMO95445 188 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 ATP1A1-AS1Q5TC04 95 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 YPEL2Q96QA6 119 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 FAM181BA6NEQ2 426 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 SNRNP200O75643 2136 aaKnown RBP12.45□□□□□ -0.42
CHD4-201ENST00000357008 APOBEC3AP31941 199 aaPredicted RBP12.45□□□□□ -0.42
CHD4-201ENST00000357008 HIST3H2BBQ8N257 126 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 ANKRD36A6QL64 1941 aa12.45□□□□□ -0.42
CHD4-201ENST00000357008 PGPEP1LA6NFU8 196 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 TRGV3P03979 118 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 C1QL4Q86Z23 238 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 LINC00312Q9Y6C7 94 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 COL5A3P25940 1745 aaPredicted RBP12.44□□□□□ -0.42
CHD4-201ENST00000357008 FBLN7Q53RD9 439 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 RTN4RL2Q86UN3 420 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 MRPS18CQ9Y3D5 142 aaKnown RBP12.44□□□□□ -0.42
CHD4-201ENST00000357008 C15orf61A6NNL5 157 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 FOXH1O75593 365 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 TMEM50AO95807 157 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 TYMSP04818 313 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 OCC1Q8TAD7 63 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 LYZL4Q96KX0 146 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 RGPD3A6NKT7 1758 aaPredicted RBP12.44□□□□□ -0.42
CHD4-201ENST00000357008 IGHV2OR16-5A0A0B4J2B6 119 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 SAMD13Q5VXD3 122 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 ZNF257Q9Y2Q1 563 aa12.44□□□□□ -0.42
CHD4-201ENST00000357008 CD55P08174 381 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 LINC00614P0C842 121 aa12.43□□□□□ -0.42
CHD4-201ENST00000357008 SSBP4Q9BWG4 385 aaPredicted RBP12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 141.6 ms