RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 TMEM95Q3KNT9 176 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 CXorf66Q5JRM2 361 aaPredicted RBP7.58□□□□□ -1.2
CUX1-216ENST00000558469 LURAP1LQ8IV03 231 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 OR11H7Q8NGC8 314 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 OR10W1Q8NGF6 305 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 OR4D5Q8NGN0 318 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 OR5B3Q8NH48 314 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 NOL4LQ96MY1 436 aaPredicted RBP7.58□□□□□ -1.2
CUX1-216ENST00000558469 NDUFA4L2Q9NRX3 87 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 ZNF257Q9Y2Q1 563 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 FBXO7Q9Y3I1 522 aa7.58□□□□□ -1.2
CUX1-216ENST00000558469 A0A1B0GW64 132 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 HMX3A6NHT5 357 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 CEBPZOSA8MTT3 80 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 TEX22C9J3V5 150 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 AP4M1O00189 453 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 TSPAN9O75954 239 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 NKX2-1P43699 371 aaPredicted RBP7.57□□□□□ -1.2
CUX1-216ENST00000558469 CYCSP99999 105 aaKnown RBP7.57□□□□□ -1.2
CUX1-216ENST00000558469 PRCDQ00LT1 54 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 ECSCRQ19T08 205 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 AARDQ4LEZ3 155 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 UNQ5815/PRO19632Q6UWF5 114 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 PRIMA1Q86XR5 153 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 Q8N2B8 174 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 LFNGQ8NES3 379 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 OR52E5Q8NH55 327 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 OR2T6Q8NHC8 308 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 SGMS2Q8NHU3 365 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 WDR89Q96FK6 387 aaPredicted RBP7.57□□□□□ -1.2
CUX1-216ENST00000558469 NMES1Q9C002 83 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 ZNF436Q9C0F3 470 aaPredicted RBP7.57□□□□□ -1.2
CUX1-216ENST00000558469 MAGT1Q9H0U3 335 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 RBKSQ9H477 322 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 HSPB7Q9UBY9 170 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 CACFD1Q9UGQ2 172 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 WSB1Q9Y6I7 421 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 JMJD1CQ15652 2540 aa7.57□□□□□ -1.2
CUX1-216ENST00000558469 TRAV41A0A0B4J266 112 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 FAM90A26D6RGX4 464 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 G3V318 75 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 SYNGR2O43760 224 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 MBPP02686 304 aaPredicted RBP7.56□□□□□ -1.2
CUX1-216ENST00000558469 IGF1P05019 195 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 REG1AP05451 166 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 AREGP15514 252 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 HOXA1P49639 335 aaPredicted RBP7.56□□□□□ -1.2
CUX1-216ENST00000558469 ID3Q02535 119 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 TMEM267Q0VDI3 215 aaPredicted RBP7.56□□□□□ -1.2
CUX1-216ENST00000558469 PDLIM3Q53GG5 364 aaPredicted RBP7.56□□□□□ -1.2
CUX1-216ENST00000558469 STPG2Q8N412 459 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 OR5T1Q8NG75 326 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 C16orf95Q9H693 158 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 PLEKHA3Q9HB20 300 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 ENY2Q9NPA8 101 aa7.56□□□□□ -1.2
CUX1-216ENST00000558469 HEYLQ9NQ87 328 aaPredicted RBP7.56□□□□□ -1.2
CUX1-216ENST00000558469 C2CD3Q4AC94 2353 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 A0A1W2PN81 502 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 IGLC7A0M8Q6 106 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 WRBO00258 174 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 SSSCA1O60232 199 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 MED6O75586 246 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 NDUFA7O95182 113 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 OR13C7P0DN81 318 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 HKR1P10072 659 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 IAPPP10997 89 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 LORP23490 312 aaPredicted RBP7.55□□□□□ -1.2
CUX1-216ENST00000558469 CHRNA7P36544 502 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 BCAP31P51572 246 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 CRIP2P52943 208 aaPredicted RBP7.55□□□□□ -1.2
CUX1-216ENST00000558469 S100A10P60903 97 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 POLR2GP62487 172 aaKnown RBP eCLIP7.55□□□□□ -1.2
CUX1-216ENST00000558469 CD83Q01151 205 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 WT1-ASQ06250 92 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 SRSF4Q08170 494 aaKnown RBP7.55□□□□□ -1.2
CUX1-216ENST00000558469 IL15RAQ13261 267 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 RAB32Q13637 225 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 LRRC37A5PQ49AS3 106 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 AKIRIN2Q53H80 203 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 ASPHD1Q5U4P2 390 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 C11orf87Q6NUJ2 197 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP7.55□□□□□ -1.2
CUX1-216ENST00000558469 OR4F5Q8NH21 305 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 LINC01006Q8NI28 216 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 DTD1Q8TEA8 209 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 CHAC2Q8WUX2 184 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 SRSF8Q9BRL6 282 aaKnown RBP7.55□□□□□ -1.2
CUX1-216ENST00000558469 HIPK2Q9H2X6 1198 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 SERTAD4Q9NUC0 356 aa7.55□□□□□ -1.2
CUX1-216ENST00000558469 LSM5Q9Y4Y9 91 aaKnown RBP7.55□□□□□ -1.2
CUX1-216ENST00000558469 K7EPK0 472 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 GIPP09681 153 aaPredicted RBP7.54□□□□□ -1.2
CUX1-216ENST00000558469 MDKP21741 143 aaPredicted RBP7.54□□□□□ -1.2
CUX1-216ENST00000558469 PSMB6P28072 239 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 SNCAP37840 140 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 ERHP84090 104 aaKnown RBP7.54□□□□□ -1.2
CUX1-216ENST00000558469 C19orf54Q5BKX5 351 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 C19orf35Q6ZS72 473 aa7.54□□□□□ -1.2
CUX1-216ENST00000558469 HSD17B13Q7Z5P4 300 aaPredicted RBP7.54□□□□□ -1.2
CUX1-216ENST00000558469 CENPVQ7Z7K6 275 aaPredicted RBP7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms