RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 S4R3C0 116 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 COL4A4P53420 1690 aaPredicted RBP13.6□□□□□ -0.23
CUX1-213ENST00000549414 VSIRQ9H7M9 311 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 NAGKQ9UJ70 344 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 PITPNC1Q9UKF7 332 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 ELOA3CA0A087WX78 387 aaPredicted RBP13.59□□□□□ -0.23
CUX1-213ENST00000549414 PGPA6NDG6 321 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 HIST1H1BP16401 226 aaKnown RBP13.59□□□□□ -0.23
CUX1-213ENST00000549414 FA2HQ7L5A8 372 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 TMEM208Q9BTX3 173 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 ZNF430Q9H8G1 570 aaPredicted RBP13.59□□□□□ -0.23
CUX1-213ENST00000549414 CDKN1AP38936 164 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 HERPUD1Q15011 391 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 LY6EQ16553 131 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 REG4Q9BYZ8 158 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 CRIM1Q9NZV1 1036 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 NAV3Q8IVL0 2385 aa13.59□□□□□ -0.23
CUX1-213ENST00000549414 NDUFA2O43678 99 aa13.58□□□□□ -0.23
CUX1-213ENST00000549414 IL6RP08887 468 aaPredicted RBP13.58□□□□□ -0.23
CUX1-213ENST00000549414 ANOS1P23352 680 aa13.58□□□□□ -0.23
CUX1-213ENST00000549414 NUBP1P53384 320 aa13.58□□□□□ -0.23
CUX1-213ENST00000549414 HLA-DRB5Q30154 266 aa13.58□□□□□ -0.23
CUX1-213ENST00000549414 ELOVL5Q9NYP7 299 aa13.58□□□□□ -0.23
CUX1-213ENST00000549414 APOBEC3AP31941 199 aaPredicted RBP13.58□□□□□ -0.24
CUX1-213ENST00000549414 ZNF146Q15072 292 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 SSX8Q7RTT4 187 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 LIME1Q9H400 295 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 DNAJC4Q9NNZ3 241 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 HIGD1AQ9Y241 93 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 MLNRO43193 412 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 WDR73Q6P4I2 378 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 PRNTQ86SH4 94 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 HIVEP3Q5T1R4 2406 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 B9A039 149 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 HAX1O00165 279 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 ATP5G3P48201 142 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 GCSAMLQ5JQS6 135 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 WFDC3Q8IUB2 231 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 TMEM186Q96B77 213 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 PLSCR4Q9NRQ2 329 aa13.58□□□□□ -0.24
CUX1-213ENST00000549414 A0A0G2JRQ6 117 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 IGKV1-5P01602 117 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 CLDND2Q8NHS1 167 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 CLEC7AQ9BXN2 247 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 C8orf88P0DMB2 117 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 CFPP27918 469 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 GCHFRP30047 84 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 KIAA1644Q3SXP7 199 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 RPRMLQ8N4K4 120 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 STXBP6Q8NFX7 210 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 FBXL15Q9H469 300 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 IGHV1-46P01743 117 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 OR9G9P0C7N8 305 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 OR51G1Q8NGK1 321 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 PRSS3P2Q8NHM4 247 aa13.57□□□□□ -0.24
CUX1-213ENST00000549414 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.56□□□□□ -0.24
CUX1-213ENST00000549414 TRGC1P0CF51 173 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 AGAP20933 346 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 WDR31Q8NA23 367 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 TRBV23-1A0A0A0MS06 115 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 SRRM5B3KS81 715 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 CGAP01215 116 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 DUTP33316 252 aaKnown RBP13.56□□□□□ -0.24
CUX1-213ENST00000549414 SELENOTP62341 195 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 NMSQ5H8A3 153 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 FAM90A1Q86YD7 464 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 ZNF788Q6ZQV5 615 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 IGKV1-6A0A0C4DH72 117 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 LOC105371267A0A1B0GV96 52 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 IBA57Q5T440 356 aaKnown RBP13.56□□□□□ -0.24
CUX1-213ENST00000549414 CCDC144NLQ6NUI1 221 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 CD177Q8N6Q3 437 aa13.56□□□□□ -0.24
CUX1-213ENST00000549414 PAX6P26367 422 aa13.55□□□□□ -0.24
CUX1-213ENST00000549414 OR2J3O76001 311 aa13.55□□□□□ -0.24
CUX1-213ENST00000549414 PF4V1P10720 104 aa13.55□□□□□ -0.24
CUX1-213ENST00000549414 ICAM4Q14773 271 aa13.55□□□□□ -0.24
CUX1-213ENST00000549414 FAM53AQ6NSI3 398 aaPredicted RBP13.55□□□□□ -0.24
CUX1-213ENST00000549414 Q6P435 159 aa13.55□□□□□ -0.24
CUX1-213ENST00000549414 Q6ZRM9 215 aa13.55□□□□□ -0.24
CUX1-213ENST00000549414 SSBP3Q9BWW4 388 aaPredicted RBP13.55□□□□□ -0.24
CUX1-213ENST00000549414 ORM1P02763 201 aa13.55□□□□□ -0.24
CUX1-213ENST00000549414 CD24P25063 80 aa13.55□□□□□ -0.24
CUX1-213ENST00000549414 RBM14Q96PK6 669 aaKnown RBP13.55□□□□□ -0.24
CUX1-213ENST00000549414 SLC25A15Q9Y619 301 aa13.55□□□□□ -0.24
CUX1-213ENST00000549414 A0A087X0M5 115 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 A0A1B0GX30 115 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 COLCA1Q6ZS62 124 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 GATAD1Q8WUU5 269 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 ZNF106Q9H2Y7 1883 aaKnown RBP13.54□□□□□ -0.24
CUX1-213ENST00000549414 TLN2Q9Y4G6 2542 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 NAV2Q8IVL1 2488 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 YPEL1O60688 119 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 LIPFP07098 398 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 YPEL2Q96QA6 119 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 RABAC1Q9UI14 185 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 SH2D7A6NKC9 451 aaPredicted RBP13.54□□□□□ -0.24
CUX1-213ENST00000549414 TMEM250H0YL14 139 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 SAA1P0DJI8 122 aaPredicted RBP13.54□□□□□ -0.24
CUX1-213ENST00000549414 COQ2Q96H96 371 aa13.54□□□□□ -0.24
CUX1-213ENST00000549414 ZFYVE26Q68DK2 2539 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms