RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 FRMD6-AS1P0C7T7 363 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 RPL5P46777 297 aaKnown RBP8.05□□□□□ -1.12
CD44-227ENST00000528086 RND3P61587 244 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 TSPAN5P62079 268 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 RPEL1Q2QD12 228 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 UNQ9165/PRO28630Q6UXU0 137 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 SLC25A42Q86VD7 318 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 TMEM229BQ8NBD8 167 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 DMBX1Q8NFW5 382 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 RAB2BQ8WUD1 216 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 CACNG8Q8WXS5 425 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 AP3S1Q92572 193 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 RBM38Q9H0Z9 239 aaKnown RBP8.05□□□□□ -1.12
CD44-227ENST00000528086 FAM212BQ9NTI7 297 aaPredicted RBP8.05□□□□□ -1.12
CD44-227ENST00000528086 CCDC59Q9P031 241 aaKnown RBP8.05□□□□□ -1.12
CD44-227ENST00000528086 ZMAT5Q9UDW3 170 aaKnown RBP8.05□□□□□ -1.12
CD44-227ENST00000528086 SMAD5-AS1Q9Y6J3 95 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 RYR3Q15413 4870 aa8.05□□□□□ -1.12
CD44-227ENST00000528086 CSMD3Q7Z407 3707 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 C2orf70A6NJV1 201 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 C15orf61A6NNL5 157 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 GABARAPH6UMI1 98 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 K7EIM0 57 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 SERPINE2P07093 398 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 TRAPPC2P0DI81 140 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 TRAPPC2BP0DI82 140 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 OR13C7P0DN81 318 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 DEFB114Q30KQ6 69 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 CD300EQ496F6 205 aaPredicted RBP8.04□□□□□ -1.12
CD44-227ENST00000528086 Q6ZRM9 215 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 GPHB5Q86YW7 130 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 CMTM1Q8IZ96 169 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 SLC38A6Q8IZM9 456 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 GDPD1Q8N9F7 314 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 OR1L8Q8NGR8 309 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 OR13C8Q8NGS7 320 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 LHFPL5Q8TAF8 219 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 SMIM4Q8WVI0 70 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 SRSF8Q9BRL6 282 aaKnown RBP8.04□□□□□ -1.12
CD44-227ENST00000528086 RTBDNQ9BSG5 229 aaPredicted RBP8.04□□□□□ -1.12
CD44-227ENST00000528086 ELOVL1Q9BW60 279 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 ZC4H2Q9NQZ6 224 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 OR51B2Q9Y5P1 312 aa8.04□□□□□ -1.12
CD44-227ENST00000528086 IGHV3-21A0A0B4J1V1 117 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 A0A0B4J293 547 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 IGHV3-35A0A0C4DH35 117 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 A8MZ25 164 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 LGALS9O00182 355 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 CTDSPLO15194 276 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 GGCTO75223 188 aaKnown RBP8.03□□□□□ -1.12
CD44-227ENST00000528086 CLEC3BP05452 202 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 IGHV4-30-4P0DP06 118 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 TNFSF8P32971 234 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 ADMP35318 185 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 PPP5CP53041 499 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 PIGPP57054 158 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 SP6Q3SY56 376 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 RNASE10Q5GAN6 216 aaKnown RBP8.03□□□□□ -1.12
CD44-227ENST00000528086 STEAP1BQ6NZ63 245 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 ARRDC1Q8N5I2 433 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 TERB2Q8NHR7 220 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 MARCH1Q8TCQ1 289 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 BORCS5Q969J3 196 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 BCL7BQ9BQE9 202 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 AIFM2Q9BRQ8 373 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 CHRDL1Q9BU40 450 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 COMMD5Q9GZQ3 224 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 MLXQ9UH92 298 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 F11RQ9Y624 299 aaKnown RBP8.03□□□□□ -1.12
CD44-227ENST00000528086 U3KQK5 164 aa8.03□□□□□ -1.12
CD44-227ENST00000528086 STARD9Q9P2P6 4700 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 DPPA5A6NC42 116 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 H0Y980 276 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 RGS5O15539 181 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 RAB3DO95716 219 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 NHLRC4P0CG21 123 aaPredicted RBP8.02□□□□□ -1.13
CD44-227ENST00000528086 FOLR2P14207 255 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 HIST1H1BP16401 226 aaKnown RBP8.02□□□□□ -1.13
CD44-227ENST00000528086 GPR183P32249 361 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 ARL3P36405 182 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 ERVK-16P61578 105 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 TM4SF20Q53R12 229 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 LPCAT3Q6P1A2 487 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 LINC00322Q6ZN03 302 aaPredicted RBP8.02□□□□□ -1.13
CD44-227ENST00000528086 OR2C3Q8N628 320 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 OR4C16Q8NGL9 310 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 SCARB1Q8WTV0 552 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 TMEM230Q96A57 120 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 EEF1AKMT3Q96AZ1 226 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 DIRAS2Q96HU8 199 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 WFDC10AQ9H1F0 79 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 C5orf66Q9H5L9 145 aa8.02□□□□□ -1.13
CD44-227ENST00000528086 ANKRD20A5PA0PJZ0 165 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 A8MWP6 167 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 I3L2K1 104 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 GSTZ1O43708 216 aaPredicted RBP8.01□□□□□ -1.13
CD44-227ENST00000528086 CD7P09564 240 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 C8orf88P0DMB2 117 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 DEFA4P12838 97 aa8.01□□□□□ -1.13
CD44-227ENST00000528086 TBPP20226 339 aa8.01□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms