RNA–Protein interactions for RNA: ENST00000486991.1

NR1H3-223, Transcript of nuclear receptor subfamily 1 group H member 3, human

TSL 4

Gene NR1H3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1H3-223	ENST00000486991	HSPB9	Q9BQS6	159 aa		10.28	□□□□□ -0.76
NR1H3-223	ENST00000486991	AURKAIP1	Q9NWT8	199 aa	Predicted RBP	10.28	□□□□□ -0.76
NR1H3-223	ENST00000486991	MGAT4C	Q9UBM8	478 aa		10.28	□□□□□ -0.76
NR1H3-223	ENST00000486991	PRND	Q9UKY0	176 aa		10.28	□□□□□ -0.76
NR1H3-223	ENST00000486991		A0A1B0GU03	582 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	C15orf61	A6NNL5	157 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	NXPH3	O95157	252 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	SIX6	O95475	246 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	MAS1L	P35410	378 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	CX3CL1	P78423	397 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	FXYD3	Q14802	87 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	IAH1	Q2TAA2	248 aa	Predicted RBP	10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	C10orf55	Q5SWW7	151 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	GSG1L	Q6UXU4	331 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	OR5AU1	Q8NGC0	362 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	OR4X2	Q8NGF9	303 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	GRPEL2	Q8TAA5	225 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	HINT2	Q9BX68	163 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	QTRT1	Q9BXR0	403 aa	Known RBP	10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	COMMD5	Q9GZQ3	224 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	PARP11	Q9NR21	331 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	CTNNBIP1	Q9NSA3	81 aa	Predicted RBP	10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	OR51B2	Q9Y5P1	312 aa		10.27	□□□□□ -0.77
NR1H3-223	ENST00000486991	IGHV7-81	A0A0B4J1V7	117 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	TEX50	A0A1B0GTY4	177 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	RPL27A	P46776	148 aa	Known RBP	10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	RRAS2	P62070	204 aa	Predicted RBP	10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	FCN2	Q15485	313 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	TCTEX1D4	Q5JR98	221 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	ZNF562	Q6V9R5	426 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	SLC35E3	Q7Z769	313 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	FOXRED2	Q8IWF2	684 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	ARPC1A	Q92747	370 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	OR10C1	Q96KK4	312 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	FYTTD1	Q96QD9	318 aa	Known RBP	10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	CITED2	Q99967	270 aa	Predicted RBP	10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	PDCD10	Q9BUL8	212 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	TMEM14B	Q9NUH8	114 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	FKBP11	Q9NYL4	201 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	GSKIP	Q9P0R6	139 aa		10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	FOXA2	Q9Y261	457 aa	Predicted RBP	10.26	□□□□□ -0.77
NR1H3-223	ENST00000486991	LINC01548	A6NM66	108 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	ST8SIA3	O43173	380 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	SCGB1D2	O95969	90 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	IFNA17	P01571	189 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	IGHG2	P01859	326 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	SLC25A6	P12236	298 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	SSBP2	P81877	361 aa	Predicted RBP	10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	NDP	Q00604	133 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	CD83	Q01151	205 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	SPINK9	Q5DT21	86 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	ZBTB8B	Q8NAP8	495 aa	Predicted RBP	10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	OR5M8	Q8NGP6	311 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	OR1L8	Q8NGR8	309 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	SRSF12	Q8WXF0	261 aa	Known RBP	10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	C2orf50	Q96LR7	162 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	FAM103A1	Q9BTL3	118 aa	Known RBP	10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991	COA4	Q9NYJ1	87 aa		10.25	□□□□□ -0.77
NR1H3-223	ENST00000486991		A0A1B0GVG6	124 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991		A0A1W2PRX2	142 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	TCRBV4S1A1T	A0A5B7	111 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	MSGN1	A6NI15	193 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	ATP6V0E1	O15342	81 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	FGF2	P09038	288 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	TRAPPC2	P0DI81	140 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	TRAPPC2B	P0DI82	140 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	APELA	P0DMC3	54 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	CXCL3	P19876	107 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	HSPE1	P61604	102 aa	Known RBP	10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	C10orf99	Q6UWK7	81 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	REC114	Q7Z4M0	266 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	ZNF429	Q86V71	674 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	OR5B3	Q8NH48	314 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	ZNF257	Q9Y2Q1	563 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	FBXO7	Q9Y3I1	522 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	TSSC4	Q9Y5U2	329 aa	Predicted RBP	10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	DNAH9	Q9NYC9	4486 aa		10.24	□□□□□ -0.77
NR1H3-223	ENST00000486991	HMX3	A6NHT5	357 aa		10.23	□□□□□ -0.77
NR1H3-223	ENST00000486991		E7EUB6	86 aa		10.23	□□□□□ -0.77
NR1H3-223	ENST00000486991	PITX3	O75364	302 aa		10.23	□□□□□ -0.77
NR1H3-223	ENST00000486991	PF4V1	P10720	104 aa		10.23	□□□□□ -0.77
NR1H3-223	ENST00000486991	IGLL1	P15814	213 aa		10.23	□□□□□ -0.77
NR1H3-223	ENST00000486991	HOXA1	P49639	335 aa	Predicted RBP	10.23	□□□□□ -0.77
NR1H3-223	ENST00000486991	ECSCR	Q19T08	205 aa		10.23	□□□□□ -0.77
NR1H3-223	ENST00000486991	CXorf66	Q5JRM2	361 aa	Predicted RBP	10.23	□□□□□ -0.77
NR1H3-223	ENST00000486991	OR11H7	Q8NGC8	314 aa		10.23	□□□□□ -0.77
NR1H3-223	ENST00000486991	OR4D5	Q8NGN0	318 aa		10.23	□□□□□ -0.77
NR1H3-223	ENST00000486991	LINC00527	Q9UJ94	153 aa		10.23	□□□□□ -0.77
NR1H3-223	ENST00000486991		A0A1B0GW64	132 aa		10.22	□□□□□ -0.77
NR1H3-223	ENST00000486991	CGB1	A6NKQ9	187 aa		10.22	□□□□□ -0.77
NR1H3-223	ENST00000486991	CEBPZOS	A8MTT3	80 aa		10.22	□□□□□ -0.77
NR1H3-223	ENST00000486991	AP4M1	O00189	453 aa		10.22	□□□□□ -0.77
NR1H3-223	ENST00000486991	EGR2	P11161	476 aa	Predicted RBP	10.22	□□□□□ -0.77
NR1H3-223	ENST00000486991	NKX2-1	P43699	371 aa	Predicted RBP	10.22	□□□□□ -0.77
NR1H3-223	ENST00000486991	H2BFS	P57053	126 aa		10.22	□□□□□ -0.77
NR1H3-223	ENST00000486991	SPCS3	P61009	180 aa		10.22	□□□□□ -0.77
NR1H3-223	ENST00000486991	SLC35B1	P78383	322 aa		10.22	□□□□□ -0.77
NR1H3-223	ENST00000486991	PRCD	Q00LT1	54 aa		10.22	□□□□□ -0.77
NR1H3-223	ENST00000486991	TNFRSF9	Q07011	255 aa		10.22	□□□□□ -0.77
NR1H3-223	ENST00000486991	AARD	Q4LEZ3	155 aa		10.22	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms