RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 FN1P02751 2386 aaKnown RBP12.12□□□□□ -0.47
USP4-203ENST00000415188 NSD1Q96L73 2696 aaPredicted RBP12.11□□□□□ -0.47
USP4-203ENST00000415188 SAA2-SAA4A0A096LPE2 208 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 TRAV38-1A0A0B4J264 116 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 DPRXA6NFQ7 191 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 ZNF727A8MUV8 499 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 FNDC10F2Z333 226 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 CLDN34H7C241 214 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 SLC31A2O15432 143 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 KBTBD11O94819 623 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 IFNA10P01566 189 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 IGHV2-5P01817 119 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 CD3EP07766 207 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 SAA2P0DJI9 122 aaPredicted RBP12.11□□□□□ -0.47
USP4-203ENST00000415188 OPRK1P41145 380 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 CDC34P49427 236 aaPredicted RBP12.11□□□□□ -0.47
USP4-203ENST00000415188 ATP5IP56385 69 aaPredicted RBP12.11□□□□□ -0.47
USP4-203ENST00000415188 LINC00205P59089 165 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 BSPH1Q075Z2 132 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 ELOBQ15370 118 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 WDR25Q64LD2 544 aaPredicted RBP12.11□□□□□ -0.47
USP4-203ENST00000415188 C1orf87Q8N0U7 546 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 RPUSD1Q9UJJ7 312 aaKnown RBP12.11□□□□□ -0.47
USP4-203ENST00000415188 LINC00312Q9Y6C7 94 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 DOCK11Q5JSL3 2073 aa12.11□□□□□ -0.47
USP4-203ENST00000415188 DYSFO75923 2080 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 C17orf100A8MU93 164 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 PRSS46E5RG02 174 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 AP4M1O00189 453 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 SOD3P08294 240 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 SMIM6P0DI80 62 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 PAX1P15863 534 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 MEOX2P50222 304 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 ATP5J2P56134 94 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 CD81P60033 236 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 SLC25A48Q6ZT89 311 aaKnown RBP12.1□□□□□ -0.47
USP4-203ENST00000415188 TCF23Q7RTU1 214 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 RAB24Q969Q5 203 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 TXNDC17Q9BRA2 123 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 GAL3ST2Q9H3Q3 398 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 ENY2Q9NPA8 101 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 TMEM14BQ9NUH8 114 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 PRNDQ9UKY0 176 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 CADP27708 2225 aa12.1□□□□□ -0.47
USP4-203ENST00000415188 ZANQ9Y493 2812 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 GYPAP02724 150 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 OPN1MWP04001 364 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 OPN1MW2P0DN77 364 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 OPN1MW3P0DN78 364 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 SELLP14151 372 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 RPS10P46783 165 aaKnown RBP12.09□□□□□ -0.47
USP4-203ENST00000415188 HSPE1P61604 102 aaKnown RBP12.09□□□□□ -0.47
USP4-203ENST00000415188 RTL8BQ17RB0 113 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 TMEM241Q24JQ0 296 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 ZNF672Q499Z4 452 aaPredicted RBP12.09□□□□□ -0.47
USP4-203ENST00000415188 SPINK9Q5DT21 86 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 FAM201AQ5SY85 155 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 SSX9Q7RTT3 188 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 Q8N7P7 452 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 Q8WTZ3 238 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 CCL13Q99616 98 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 C12orf57Q99622 126 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 SMIM7Q9BQ49 75 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 NGBQ9NPG2 151 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 ZNF257Q9Y2Q1 563 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 CSPG4Q6UVK1 2322 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 TLN2Q9Y4G6 2542 aa12.09□□□□□ -0.47
USP4-203ENST00000415188 S100A12P80511 92 aa12.08□□□□□ -0.47
USP4-203ENST00000415188 ADIPOQQ15848 244 aa12.08□□□□□ -0.47
USP4-203ENST00000415188 LYG1Q8N1E2 194 aa12.08□□□□□ -0.47
USP4-203ENST00000415188 ZNF383Q8NA42 475 aa12.08□□□□□ -0.47
USP4-203ENST00000415188 NEIL1Q96FI4 390 aaPredicted RBP12.08□□□□□ -0.47
USP4-203ENST00000415188 RHOVQ96L33 236 aa12.08□□□□□ -0.47
USP4-203ENST00000415188 ANK3Q12955 4377 aaKnown RBP12.08□□□□□ -0.47
USP4-203ENST00000415188 DNHD1Q96M86 4753 aa12.08□□□□□ -0.48
USP4-203ENST00000415188 OVOL3O00110 214 aa12.08□□□□□ -0.48
USP4-203ENST00000415188 EIF3GO75821 320 aaKnown RBP eCLIP12.08□□□□□ -0.48
USP4-203ENST00000415188 S100A9P06702 114 aaKnown RBP12.08□□□□□ -0.48
USP4-203ENST00000415188 OR4A8P0C604 315 aa12.08□□□□□ -0.48
USP4-203ENST00000415188 CDKN1AP38936 164 aa12.08□□□□□ -0.48
USP4-203ENST00000415188 OR4A47Q6IF82 309 aa12.08□□□□□ -0.48
USP4-203ENST00000415188 FAM71F2Q6NXP2 309 aa12.08□□□□□ -0.48
USP4-203ENST00000415188 TREML4Q6UXN2 200 aa12.08□□□□□ -0.48
USP4-203ENST00000415188 FAM216BQ8N7L0 139 aa12.08□□□□□ -0.48
USP4-203ENST00000415188 DEFB108BQ8NET1 73 aa12.08□□□□□ -0.48
USP4-203ENST00000415188 FKBP11Q9NYL4 201 aa12.08□□□□□ -0.48
USP4-203ENST00000415188 TET2Q6N021 2002 aaPredicted RBP12.07□□□□□ -0.48
USP4-203ENST00000415188 TRBV24-1A0A075B6N3 115 aa12.07□□□□□ -0.48
USP4-203ENST00000415188 SHISA9B4DS77 424 aa12.07□□□□□ -0.48
USP4-203ENST00000415188 F6UZH7 168 aa12.07□□□□□ -0.48
USP4-203ENST00000415188 PDE6DO43924 150 aa12.07□□□□□ -0.48
USP4-203ENST00000415188 VENTXO95231 258 aa12.07□□□□□ -0.48
USP4-203ENST00000415188 IL6RP08887 468 aaPredicted RBP12.07□□□□□ -0.48
USP4-203ENST00000415188 NPY1RP25929 384 aa12.07□□□□□ -0.48
USP4-203ENST00000415188 ERVFRD-1P60508 538 aa12.07□□□□□ -0.48
USP4-203ENST00000415188 RAB31Q13636 194 aa12.07□□□□□ -0.48
USP4-203ENST00000415188 KIAA0141Q14154 515 aaPredicted RBP12.07□□□□□ -0.48
USP4-203ENST00000415188 SLC24A4Q8NFF2 622 aa12.07□□□□□ -0.48
USP4-203ENST00000415188 NPVFQ9HCQ7 196 aa12.07□□□□□ -0.48
USP4-203ENST00000415188 TRAV3A0A0B4J244 114 aa12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms