RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RND1Q92730 232 aa17■□□□□ 0.31
CCDC88B-203ENST00000359902 ZNF714Q96N38 554 aa17■□□□□ 0.31
CCDC88B-203ENST00000359902 PTPRZ1P23471 2315 aaPredicted RBP17■□□□□ 0.31
CCDC88B-203ENST00000359902 IFITM10A6NMD0 228 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 TGOLN2O43493 480 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 CDX1P47902 265 aaPredicted RBP16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 GNB1P62873 340 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 PRCDQ00LT1 54 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 SPNS3Q6ZMD2 512 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 FRZBQ92765 325 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 PHOX2AO14813 284 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 VENTXO95231 258 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 LYPD2Q6UXB3 125 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 PLEKHA3Q9HB20 300 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 KCNIP2Q9NS61 270 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 TMEM106BQ9NUM4 274 aa16.99■□□□□ 0.31
CCDC88B-203ENST00000359902 TEX50A0A1B0GTY4 177 aa16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 CXorf1O96002 111 aa16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 TRGC1P0CF51 173 aa16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 RNASE6Q93091 150 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 PYGO2Q9BRQ0 406 aa16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 MRPL20Q9BYC9 149 aaKnown RBP16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 VSTM5A8MXK1 200 aa16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 H7BYZ3 331 aa16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 STPG3Q8N7X2 389 aa16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 NECAP1Q8NC96 275 aa16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 NEUROG1Q92886 237 aa16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 BET1LQ9NYM9 111 aa16.98■□□□□ 0.31
CCDC88B-203ENST00000359902 SHISA9B4DS77 424 aa16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 FNDC10F2Z333 226 aa16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 K7ENP7 123 aa16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 GATCO43716 136 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 SAA1P0DJI8 122 aaPredicted RBP16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 RPL29P47914 159 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 ZNF600Q6ZNG1 722 aa16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 GALR1P47211 349 aa16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 RAB31Q13636 194 aa16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 EFNB3Q15768 340 aa16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 ANAPC16Q96DE5 110 aa16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 SCNM1Q9BWG6 230 aa16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 SEPSECSQ9HD40 501 aaKnown RBP16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 TNCP24821 2201 aa16.97■□□□□ 0.31
CCDC88B-203ENST00000359902 E7EQL1 145 aa16.96■□□□□ 0.31
CCDC88B-203ENST00000359902 NDUFB4O95168 129 aa16.96■□□□□ 0.31
CCDC88B-203ENST00000359902 IGFBP2P18065 325 aa16.96■□□□□ 0.31
CCDC88B-203ENST00000359902 OSR1Q8TAX0 266 aaPredicted RBP16.96■□□□□ 0.31
CCDC88B-203ENST00000359902 H1FXQ92522 213 aaKnown RBP16.96■□□□□ 0.31
CCDC88B-203ENST00000359902 FKBP11Q9NYL4 201 aa16.96■□□□□ 0.31
CCDC88B-203ENST00000359902 F6UZH7 168 aa16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 H0YJW9 148 aa16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 NDUFB3O43676 98 aa16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 IGHV2-70P01814 119 aa16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 PRR20EP86478 221 aa16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 PRR20CP86479 221 aa16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 PRR20DP86480 221 aa16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 PRR20BP86481 221 aa16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 PRR20AP86496 221 aa16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 DMRTC2Q8IXT2 367 aaPredicted RBP16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 OR5AN1Q8NGI8 311 aa16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 DERL1Q9BUN8 251 aa16.96■□□□□ 0.3
CCDC88B-203ENST00000359902 DCHS1Q96JQ0 3298 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 SPATA31B1PQ5VZV4 182 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 OR5B12Q96R08 314 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 ELOVL1Q9BW60 279 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 SRD5A3Q9H8P0 318 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 NGBQ9NPG2 151 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 CTSZQ9UBR2 303 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 ADGRG4Q8IZF6 3080 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 APOA2P02652 100 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 LINC00869P0C866 280 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 COL8A2P25067 703 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 C4orf17Q53FE4 359 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 LRRC10Q5BKY1 277 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 LINC01551Q86U37 167 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 OR5B3Q8NH48 314 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 TXNDC17Q9BRA2 123 aa16.95■□□□□ 0.3
CCDC88B-203ENST00000359902 RHOBP62745 196 aa16.94■□□□□ 0.3
CCDC88B-203ENST00000359902 FAM122AQ96E09 287 aa16.94■□□□□ 0.3
CCDC88B-203ENST00000359902 DVL1O14640 695 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 GCHFRP30047 84 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 REG1BP48304 166 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 C2orf83Q53S99 150 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 GFI1BQ5VTD9 330 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 MOB3BQ86TA1 216 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 OR5T1Q8NG75 326 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 HARBI1Q96MB7 349 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 SLC45A2Q9UMX9 530 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 ATP5IP56385 69 aaPredicted RBP16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 RBPJQ06330 500 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 TMEM177Q53S58 311 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 TMEM144Q7Z5S9 345 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 OR10W1Q8NGF6 305 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 DYNLRB1Q9NP97 96 aa16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 YTHDF2Q9Y5A9 579 aaKnown RBP16.93■□□□□ 0.3
CCDC88B-203ENST00000359902 FOXH1O75593 365 aa16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 SOD3P08294 240 aa16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 FAM87AP0C7U9 286 aa16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 OR4X1Q8NH49 305 aa16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 ZNF596Q8TC21 504 aa16.92■□□□□ 0.3
CCDC88B-203ENST00000359902 TMEM204Q9BSN7 226 aa16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms