RNA–Protein interactions for RNA: ENST00000316694.7

SHMT1-201, Transcript of serine hydroxymethyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT1, Length 2,464 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-201ENST00000316694 TNCP24821 2201 aa18.05■□□□□ 0.48
SHMT1-201ENST00000316694 RPL29P47914 159 aaKnown RBP18.05■□□□□ 0.48
SHMT1-201ENST00000316694 KLF3P57682 345 aaPredicted RBP18.05■□□□□ 0.48
SHMT1-201ENST00000316694 CMTM2Q8TAZ6 248 aa18.05■□□□□ 0.48
SHMT1-201ENST00000316694 LRFN3Q9BTN0 628 aa18.05■□□□□ 0.48
SHMT1-201ENST00000316694 IL36BQ9NZH7 164 aa18.05■□□□□ 0.48
SHMT1-201ENST00000316694 OR51B2Q9Y5P1 312 aa18.05■□□□□ 0.48
SHMT1-201ENST00000316694 DEFB108BQ8NET1 73 aa18.04■□□□□ 0.48
SHMT1-201ENST00000316694 NAGKQ9UJ70 344 aa18.04■□□□□ 0.48
SHMT1-201ENST00000316694 OTOGLQ3ZCN5 2332 aa18.04■□□□□ 0.48
SHMT1-201ENST00000316694 KBTBD11-OT1A0A1B0GTJ5 212 aa18.04■□□□□ 0.48
SHMT1-201ENST00000316694 CGB3P0DN86 165 aa18.04■□□□□ 0.48
SHMT1-201ENST00000316694 CGB7P0DN87 165 aa18.04■□□□□ 0.48
SHMT1-201ENST00000316694 RAB4BP61018 213 aa18.04■□□□□ 0.48
SHMT1-201ENST00000316694 YLPM1P49750 1951 aaKnown RBP18.04■□□□□ 0.48
SHMT1-201ENST00000316694 DSCAML1Q8TD84 2053 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 AHRRA9YTQ3 701 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 CD33P20138 364 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 OR5I1Q13606 314 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 CHODLQ9H9P2 273 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 ASCL3Q9NQ33 180 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 A8MXE2 369 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 EREGO14944 169 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 LHBP01229 141 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 FTH1P19P0C7X4 201 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 ERVFC1-1P60608 527 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 PSG5Q15238 335 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 MOB3BQ86TA1 216 aa18.03■□□□□ 0.48
SHMT1-201ENST00000316694 EAF1Q96JC9 268 aaPredicted RBP18.03■□□□□ 0.48
SHMT1-201ENST00000316694 MRPL18Q9H0U6 180 aaKnown RBP18.03■□□□□ 0.48
SHMT1-201ENST00000316694 POLR3KQ9Y2Y1 108 aaPredicted RBP18.03■□□□□ 0.48
SHMT1-201ENST00000316694 RP1L1Q8IWN7 2480 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-201ENST00000316694 TRGV10A0A0A0MS01 117 aa18.02■□□□□ 0.48
SHMT1-201ENST00000316694 ZNF705FA8MVS1 300 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-201ENST00000316694 ZNF705DP0CH99 300 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-201ENST00000316694 ZNF705BP0CI00 300 aaPredicted RBP18.02■□□□□ 0.48
SHMT1-201ENST00000316694 PRR20EP86478 221 aa18.02■□□□□ 0.48
SHMT1-201ENST00000316694 PRR20CP86479 221 aa18.02■□□□□ 0.48
SHMT1-201ENST00000316694 PRR20DP86480 221 aa18.02■□□□□ 0.48
SHMT1-201ENST00000316694 PRR20BP86481 221 aa18.02■□□□□ 0.48
SHMT1-201ENST00000316694 PRR20AP86496 221 aa18.02■□□□□ 0.48
SHMT1-201ENST00000316694 SEM1Q6ZVN7 128 aa18.02■□□□□ 0.48
SHMT1-201ENST00000316694 TGIF2LXQ8IUE1 241 aa18.02■□□□□ 0.48
SHMT1-201ENST00000316694 IGFL2Q6UWQ7 119 aa18.01■□□□□ 0.47
SHMT1-201ENST00000316694 OR1L6Q8NGR2 347 aa18.01■□□□□ 0.47
SHMT1-201ENST00000316694 C11orf52Q96A22 123 aa18.01■□□□□ 0.47
SHMT1-201ENST00000316694 PLEKHA3Q9HB20 300 aa18.01■□□□□ 0.47
SHMT1-201ENST00000316694 CBLN4Q9NTU7 201 aa18.01■□□□□ 0.47
SHMT1-201ENST00000316694 TANC2Q9HCD6 1990 aa18.01■□□□□ 0.47
SHMT1-201ENST00000316694 J3QR06 171 aa18.01■□□□□ 0.47
SHMT1-201ENST00000316694 PIP4P1Q86T03 277 aa18.01■□□□□ 0.47
SHMT1-201ENST00000316694 ZNF436-AS1Q8NC38 126 aaPredicted RBP18.01■□□□□ 0.47
SHMT1-201ENST00000316694 NEUROG1Q92886 237 aa18.01■□□□□ 0.47
SHMT1-201ENST00000316694 PLCE1Q9P212 2302 aa18.01■□□□□ 0.47
SHMT1-201ENST00000316694 MGAQ8IWI9 3026 aa18.01■□□□□ 0.47
SHMT1-201ENST00000316694 C9JCJ5 164 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 ITGB1BP1O14713 200 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 FRMD6-AS1P0C7T7 363 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 LINC00869P0C866 280 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 IER3P46695 156 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 RPEL1Q2QD12 228 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 DEFB109BQ30KR1 87 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 TP53TG3Q9ULZ0 132 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 FCN1O00602 326 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 CRISP2P16562 243 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 GATA2P23769 480 aaPredicted RBP18■□□□□ 0.47
SHMT1-201ENST00000316694 OR10J1P30954 320 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 FAM169BQ8N8A8 192 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 ZCCHC14Q8WYQ9 949 aaKnown RBP18■□□□□ 0.47
SHMT1-201ENST00000316694 NABP2Q9BQ15 211 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 RAB9BQ9NP90 201 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 ZNRD1Q9P1U0 126 aa18■□□□□ 0.47
SHMT1-201ENST00000316694 IGKV1-16P04430 117 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 CRYBB3P26998 211 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 SELENOTP62341 195 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 KRTCAP3Q53RY4 240 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 CENPWQ5EE01 88 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 MMD2Q8IY49 270 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 CORO2AQ92828 525 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 TBX15Q96SF7 602 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 PARD6AQ9NPB6 346 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 SMG1Q96Q15 3661 aaKnown RBP17.99■□□□□ 0.47
SHMT1-201ENST00000316694 GLRXP35754 106 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 GNG4P50150 75 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 LGALS4P56470 323 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 C1orf194Q5T5A4 169 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 ADTRPQ96IZ2 230 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 PRNDQ9UKY0 176 aa17.99■□□□□ 0.47
SHMT1-201ENST00000316694 HELTA6NFD8 242 aa17.98■□□□□ 0.47
SHMT1-201ENST00000316694 OR7C2O60412 319 aa17.98■□□□□ 0.47
SHMT1-201ENST00000316694 MMP23AO75900 390 aa17.98■□□□□ 0.47
SHMT1-201ENST00000316694 SERF1AO75920 110 aa17.98■□□□□ 0.47
SHMT1-201ENST00000316694 ZNF474Q6S9Z5 364 aaPredicted RBP17.98■□□□□ 0.47
SHMT1-201ENST00000316694 OR8I2Q8N0Y5 310 aa17.98■□□□□ 0.47
SHMT1-201ENST00000316694 CCL13Q99616 98 aa17.98■□□□□ 0.47
SHMT1-201ENST00000316694 SLC45A2Q9UMX9 530 aa17.98■□□□□ 0.47
SHMT1-201ENST00000316694 SPINK4O60575 86 aa17.98■□□□□ 0.47
SHMT1-201ENST00000316694 TPPP2P59282 170 aa17.98■□□□□ 0.47
SHMT1-201ENST00000316694 FAM216BQ8N7L0 139 aa17.98■□□□□ 0.47
SHMT1-201ENST00000316694 RNF7Q9UBF6 113 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 65.4 ms