RNA–Protein interactions for RNA: ENST00000287008.7

PCDH1-201, Transcript of protocadherin 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene PCDH1, Length 4,793 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1-201ENST00000287008 Q0VFX4 171 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 SRSF9Q13242 221 aaKnown RBP eCLIP15.55■□□□□ 0.08
PCDH1-201ENST00000287008 FAM53AQ6NSI3 398 aaPredicted RBP15.55■□□□□ 0.08
PCDH1-201ENST00000287008 GTF2H5Q6ZYL4 71 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 MIEN1Q9BRT3 115 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 SBF1O95248 1867 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 NBR2O15453 112 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 ZNF207O43670 478 aaKnown RBP15.55■□□□□ 0.08
PCDH1-201ENST00000287008 YPEL1O60688 119 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 WFIKKN1Q96NZ8 548 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 YPEL2Q96QA6 119 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 UBE2L6O14933 153 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 EFNA4P52798 201 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 SIGIRRQ6IA17 410 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 SRSF12Q8WXF0 261 aaKnown RBP15.55■□□□□ 0.08
PCDH1-201ENST00000287008 FOXA2Q9Y261 457 aaPredicted RBP15.55■□□□□ 0.08
PCDH1-201ENST00000287008 LOC389332A0A1B0GUA5 103 aa15.55■□□□□ 0.08
PCDH1-201ENST00000287008 PTBP3O95758 552 aaKnown RBP15.55■□□□□ 0.08
PCDH1-201ENST00000287008 IGFBP3P17936 291 aaPredicted RBP15.55■□□□□ 0.08
PCDH1-201ENST00000287008 NMBP08949 121 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 SAPCD1Q5SSQ6 148 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 C20orf204Q6ZNR8 217 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 LINC00305Q7Z4B0 112 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 RRHO14718 337 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 EIF3GO75821 320 aaKnown RBP eCLIP15.54■□□□□ 0.08
PCDH1-201ENST00000287008 IGHV3-23P01764 117 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 C2orf83Q53S99 150 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 FGFBP3Q8TAT2 258 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 CDC42EP3Q9UKI2 254 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 IGKV1-9A0A0C4DH69 117 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 IGHV3-11P01762 117 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 FAM3BP58499 235 aaPredicted RBP15.54■□□□□ 0.08
PCDH1-201ENST00000287008 COLCA1Q6ZS62 124 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 SGK494Q96LW2 274 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 CCL1P22362 96 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 SMUG1Q53HV7 270 aa15.54■□□□□ 0.08
PCDH1-201ENST00000287008 GTF3AQ92664 365 aaKnown RBP15.54■□□□□ 0.08
PCDH1-201ENST00000287008 PSMG3Q9BT73 122 aaPredicted RBP15.54■□□□□ 0.08
PCDH1-201ENST00000287008 GCGP01275 180 aa15.53■□□□□ 0.08
PCDH1-201ENST00000287008 TRGC1P0CF51 173 aa15.53■□□□□ 0.08
PCDH1-201ENST00000287008 SRSF6Q13247 344 aaKnown RBP15.53■□□□□ 0.08
PCDH1-201ENST00000287008 GGACTQ9BVM4 153 aa15.53■□□□□ 0.08
PCDH1-201ENST00000287008 NBEAP1P0C6P0 100 aa15.53■□□□□ 0.08
PCDH1-201ENST00000287008 CACNG8Q8WXS5 425 aa15.53■□□□□ 0.08
PCDH1-201ENST00000287008 TRBV6-7A0A0A0MS04 114 aa15.53■□□□□ 0.08
PCDH1-201ENST00000287008 FOXI3A8MTJ6 420 aaPredicted RBP15.53■□□□□ 0.08
PCDH1-201ENST00000287008 AMY1AP04745 511 aa15.53■□□□□ 0.08
PCDH1-201ENST00000287008 ICAM4Q14773 271 aa15.53■□□□□ 0.08
PCDH1-201ENST00000287008 M0R143 59 aa15.52■□□□□ 0.08
PCDH1-201ENST00000287008 SIGLEC5O15389 551 aa15.52■□□□□ 0.08
PCDH1-201ENST00000287008 ZNF319Q9P2F9 582 aa15.52■□□□□ 0.08
PCDH1-201ENST00000287008 M0R3E3 92 aa15.52■□□□□ 0.08
PCDH1-201ENST00000287008 BTF3P20290 206 aaKnown RBP15.52■□□□□ 0.08
PCDH1-201ENST00000287008 C2orf68Q2NKX9 166 aa15.52■□□□□ 0.08
PCDH1-201ENST00000287008 DHRS11Q6UWP2 260 aa15.52■□□□□ 0.08
PCDH1-201ENST00000287008 CLEC19AQ6UXS0 136 aa15.52■□□□□ 0.08
PCDH1-201ENST00000287008 TRAF4Q9BUZ4 470 aaPredicted RBP15.52■□□□□ 0.08
PCDH1-201ENST00000287008 FBLN5Q9UBX5 448 aa15.52■□□□□ 0.08
PCDH1-201ENST00000287008 NCMAPQ5T1S8 102 aa15.52■□□□□ 0.07
PCDH1-201ENST00000287008 ST6GALNAC3Q8NDV1 305 aa15.52■□□□□ 0.07
PCDH1-201ENST00000287008 A0A1W2PRX2 142 aa15.52■□□□□ 0.07
PCDH1-201ENST00000287008 HLA-DQA1P01909 254 aa15.52■□□□□ 0.07
PCDH1-201ENST00000287008 CRYGSP22914 178 aa15.52■□□□□ 0.07
PCDH1-201ENST00000287008 GCHFRP30047 84 aa15.52■□□□□ 0.07
PCDH1-201ENST00000287008 PSMB2P49721 201 aa15.52■□□□□ 0.07
PCDH1-201ENST00000287008 TRAV40A0A0B4J280 105 aa15.51■□□□□ 0.07
PCDH1-201ENST00000287008 PRB3Q04118 309 aaPredicted RBP15.51■□□□□ 0.07
PCDH1-201ENST00000287008 ZNF343Q6P1L6 599 aa15.51■□□□□ 0.07
PCDH1-201ENST00000287008 DCAF16Q9NXF7 216 aa15.51■□□□□ 0.07
PCDH1-201ENST00000287008 WNT10AQ9GZT5 417 aa15.51■□□□□ 0.07
PCDH1-201ENST00000287008 SAA2-SAA4A0A096LPE2 208 aa15.51■□□□□ 0.07
PCDH1-201ENST00000287008 SRRM5B3KS81 715 aa15.51■□□□□ 0.07
PCDH1-201ENST00000287008 IL6RP08887 468 aaPredicted RBP15.51■□□□□ 0.07
PCDH1-201ENST00000287008 SAA2P0DJI9 122 aaPredicted RBP15.51■□□□□ 0.07
PCDH1-201ENST00000287008 FAM74A4Q5TZK3 123 aa15.51■□□□□ 0.07
PCDH1-201ENST00000287008 OR10S1Q8NGN2 331 aa15.51■□□□□ 0.07
PCDH1-201ENST00000287008 ITLN2Q8WWU7 325 aaPredicted RBP15.51■□□□□ 0.07
PCDH1-201ENST00000287008 LYZL4Q96KX0 146 aa15.51■□□□□ 0.07
PCDH1-201ENST00000287008 ZNF502Q8TBZ5 544 aa15.51■□□□□ 0.07
PCDH1-201ENST00000287008 RNASEH2CQ8TDP1 164 aaKnown RBP15.51■□□□□ 0.07
PCDH1-201ENST00000287008 RPRMQ9NS64 109 aa15.51■□□□□ 0.07
PCDH1-201ENST00000287008 SHANK1Q9Y566 2161 aa15.5■□□□□ 0.07
PCDH1-201ENST00000287008 SAA1P0DJI8 122 aaPredicted RBP15.5■□□□□ 0.07
PCDH1-201ENST00000287008 MBD3L4A6NDZ8 208 aaPredicted RBP15.5■□□□□ 0.07
PCDH1-201ENST00000287008 MBD3L3A6NE82 208 aaPredicted RBP15.5■□□□□ 0.07
PCDH1-201ENST00000287008 MBD3L5A6NJ08 208 aaPredicted RBP15.5■□□□□ 0.07
PCDH1-201ENST00000287008 MORN2Q502X0 79 aa15.5■□□□□ 0.07
PCDH1-201ENST00000287008 OR1N2Q8NGR9 330 aa15.5■□□□□ 0.07
PCDH1-201ENST00000287008 MBD3L2Q8NHZ7 208 aaPredicted RBP15.5■□□□□ 0.07
PCDH1-201ENST00000287008 IGHV3OR16-8A0A075B7F1 116 aa15.5■□□□□ 0.07
PCDH1-201ENST00000287008 TMEM8BA6NDV4 472 aa15.5■□□□□ 0.07
PCDH1-201ENST00000287008 MYOD1P15172 320 aa15.5■□□□□ 0.07
PCDH1-201ENST00000287008 SLC25A15Q9Y619 301 aa15.5■□□□□ 0.07
PCDH1-201ENST00000287008 IGHV3-66A0A0C4DH42 116 aa15.49■□□□□ 0.07
PCDH1-201ENST00000287008 CD24P25063 80 aa15.49■□□□□ 0.07
PCDH1-201ENST00000287008 C8orf46Q8TAG6 207 aa15.49■□□□□ 0.07
PCDH1-201ENST00000287008 PGLYRP4Q96LB8 373 aa15.49■□□□□ 0.07
PCDH1-201ENST00000287008 PACRGQ96M98 296 aaPredicted RBP15.49■□□□□ 0.07
PCDH1-201ENST00000287008 PEMTQ9UBM1 199 aa15.49■□□□□ 0.07
PCDH1-201ENST00000287008 A0A0B4J293 547 aa15.49■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms