RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 MEIS3P1A6NDR6 274 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 UPK2O00526 184 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 FCER2P06734 321 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 AREGP15514 252 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 TGFBR1P36897 503 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 OR2B8PP59922 312 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 LSM3P62310 102 aaKnown RBP14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 CADM3Q8N126 398 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 OR5H2Q8NGV7 314 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 OR51H1Q8NH63 302 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 MUC7Q8TAX7 377 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 MOB3AQ96BX8 217 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 CXorf58Q96LI9 332 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 TUBA4BQ9H853 241 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 TECRQ9NZ01 308 aaKnown RBP14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 DMRT1Q9Y5R6 373 aa14.47□□□□□ -0.09
CCDC28A-203ENST00000617445 SMIM31A0A1B0GVY4 71 aa14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 CYB5BO43169 146 aa14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 NDUFB8O95169 186 aa14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 RFX2P48378 723 aa14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 ERVK-16P61578 105 aa14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 FAM106AQ4KMX7 169 aa14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 HSD17B13Q7Z5P4 300 aaPredicted RBP14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 CMTM1Q8IZ96 169 aa14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 DMBX1Q8NFW5 382 aa14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 OR6F1Q8NGZ6 308 aa14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 DYNLRB2Q8TF09 96 aa14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 ZNF2Q9BSG1 426 aaPredicted RBP14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 THYN1Q9P016 225 aa14.46□□□□□ -0.09
CCDC28A-203ENST00000617445 IGLV11-55A0A075B6I3 123 aa14.45□□□□□ -0.1
CCDC28A-203ENST00000617445 PPP5D1E7EU14 171 aa14.45□□□□□ -0.1
CCDC28A-203ENST00000617445 OR2C1O95371 312 aa14.45□□□□□ -0.1
CCDC28A-203ENST00000617445 APOA1P02647 267 aa14.45□□□□□ -0.1
CCDC28A-203ENST00000617445 F2RP25116 425 aa14.45□□□□□ -0.1
CCDC28A-203ENST00000617445 ARL3P36405 182 aa14.45□□□□□ -0.1
CCDC28A-203ENST00000617445 CITED4Q96RK1 184 aa14.45□□□□□ -0.1
CCDC28A-203ENST00000617445 QTRT1Q9BXR0 403 aaKnown RBP14.45□□□□□ -0.1
CCDC28A-203ENST00000617445 TMEM140Q9NV12 185 aa14.45□□□□□ -0.1
CCDC28A-203ENST00000617445 SLC2A8Q9NY64 477 aa14.45□□□□□ -0.1
CCDC28A-203ENST00000617445 C2orf70A6NJV1 201 aa14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 CGB1A6NKQ9 187 aa14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 PGLYRP1O75594 196 aaPredicted RBP14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 PMP2P02689 132 aa14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 FOLR2P14207 255 aa14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 DEFB114Q30KQ6 69 aa14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 CD300EQ496F6 205 aaPredicted RBP14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 LPCAT3Q6P1A2 487 aa14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 CLEC19AQ6UXS0 136 aa14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 ADAMTSL5Q6ZMM2 481 aa14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 CCDC140Q96MF4 163 aa14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 SPATA25Q9BR10 227 aa14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 SCPEP1Q9HB40 452 aa14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 HUWE1Q7Z6Z7 4374 aaKnown RBP14.44□□□□□ -0.1
CCDC28A-203ENST00000617445 IGLC7A0M8Q6 106 aa14.43□□□□□ -0.1
CCDC28A-203ENST00000617445 IZUMO1RA6ND01 250 aa14.43□□□□□ -0.1
CCDC28A-203ENST00000617445 GPR31O00270 319 aa14.43□□□□□ -0.1
CCDC28A-203ENST00000617445 S1PR2O95136 353 aa14.43□□□□□ -0.1
CCDC28A-203ENST00000617445 S100GP29377 79 aa14.43□□□□□ -0.1
CCDC28A-203ENST00000617445 C19orf35Q6ZS72 473 aa14.43□□□□□ -0.1
CCDC28A-203ENST00000617445 GPX8Q8TED1 209 aa14.43□□□□□ -0.1
CCDC28A-203ENST00000617445 DGCR14Q96DF8 476 aaKnown RBP14.43□□□□□ -0.1
CCDC28A-203ENST00000617445 FUNDC2Q9BWH2 189 aa14.43□□□□□ -0.1
CCDC28A-203ENST00000617445 ZC4H2Q9NQZ6 224 aa14.43□□□□□ -0.1
CCDC28A-203ENST00000617445 FAM212BQ9NTI7 297 aaPredicted RBP14.43□□□□□ -0.1
CCDC28A-203ENST00000617445 TRAV3A0A0B4J244 114 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 MARCH11A6NNE9 402 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 TPPPO94811 219 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 RLN1P04808 185 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 CLEC3BP05452 202 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 TRAPPC2P0DI81 140 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 TRAPPC2BP0DI82 140 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 MYOD1P15172 320 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 HAGHQ16775 308 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 LYSMD2Q8IV50 215 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 OR1L8Q8NGR8 309 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 COMMD3Q9UBI1 195 aa14.42□□□□□ -0.1
CCDC28A-203ENST00000617445 ZNF785A8K8V0 405 aa14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 A8MWP6 167 aa14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 HLA-AP01891 365 aaKnown RBP14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 REG1AP05451 166 aa14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 EIF4EP06730 217 aaKnown RBP14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 CBLN1P23435 193 aa14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 PTBP1P26599 531 aaKnown RBP eCLIP14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 HRH1P35367 487 aa14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 CD81P60033 236 aa14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 CASC10Q5T4H9 136 aa14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 VN1R17PQ8TDU5 208 aa14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 NEURL2Q9BR09 285 aa14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 PALMDQ9NP74 551 aa14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 FKBP11Q9NYL4 201 aa14.41□□□□□ -0.1
CCDC28A-203ENST00000617445 ZNF320A2RRD8 509 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 SNAPC5O75971 98 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 IGHV3-23P01764 117 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 IFNA6P05013 189 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 SMIM18P0DKX4 95 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 LYL1P12980 280 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 HLA-DMAP28067 261 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 LPAR6P43657 344 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 RORCP51449 518 aa14.4□□□□□ -0.1
CCDC28A-203ENST00000617445 TSPAN5P62079 268 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms