RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 PUSL1Q8N0Z8 303 aaKnown RBP6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 OR10W1Q8NGF6 305 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 TMEM167AQ8TBQ9 72 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 PHLDA1Q8WV24 401 aaPredicted RBP6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 ATG5Q9H1Y0 275 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 OR2W1Q9Y3N9 320 aa6.39□□□□□ -1.39
SHKBP1-220ENST00000599716 IGKV3-7A0A075B6H7 116 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 IGHV3-49A0A0A0MS15 119 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 TMEM235A6NFC5 223 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 OR2T8A6NH00 312 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 HLA-DQB1P01920 261 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 CRYGCP07315 174 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 GADD45AP24522 165 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 BMI1P35226 326 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 TFPI2P48307 235 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 SSX1Q16384 188 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 CDNFQ49AH0 187 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 FAM209BQ5JX69 171 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 MFSD4AQ8N468 514 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 OR2C3Q8N628 320 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 ZNF502Q8TBZ5 544 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 MGLLQ99685 303 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 CCL28Q9NRJ3 127 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 FBXL17Q9UF56 701 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 MRPS7Q9Y2R9 242 aaKnown RBP6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 PRELID3BQ9Y3B1 194 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 PKD1P98161 4303 aa6.38□□□□□ -1.39
SHKBP1-220ENST00000599716 IGLC7A0M8Q6 106 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 IFITM5A6NNB3 132 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 RGS10O43665 173 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 SSX5O60225 188 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 CREBL2O60519 120 aaPredicted RBP6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 C8orf88P0DMB2 117 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 CD36P16671 472 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 HLA-GP17693 338 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 LORP23490 312 aaPredicted RBP6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 APOC4P55056 127 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 AQP4P55087 323 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 OR2B8PP59922 312 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 RPL8P62917 257 aaKnown RBP6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 MLLT11Q13015 90 aaPredicted RBP6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 TIMM50Q3ZCQ8 353 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 OR4A47Q6IF82 309 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 ZNF773Q6PK81 442 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 PLET1Q6UQ28 207 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 Q6ZWC4 215 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 WFDC3Q8IUB2 231 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 OR4S2Q8NH73 311 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 SECTM1Q8WVN6 248 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 RNF183Q96D59 192 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 CHRDL1Q9BU40 450 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 C20orf24Q9BUV8 137 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 HRASLSQ9HDD0 168 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 SCN3BQ9NY72 215 aa6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 KLK5Q9Y337 293 aaPredicted RBP6.37□□□□□ -1.39
SHKBP1-220ENST00000599716 IGHV3OR16-13A0A075B7E8 117 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 IGHV3-74A0A0B4J1X5 117 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 SULT1C2O00338 296 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 EBAG9O00559 213 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 CASQ2O14958 399 aaPredicted RBP6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 DIRAS3O95661 229 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 CTSDP07339 412 aaPredicted RBP6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 RAB6AP20340 208 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 MFAP2P55001 183 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 ANKRD55Q3KP44 614 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 C22orf42Q6IC83 251 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 Q6ZS49 121 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 SPAG16Q8N0X2 631 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 GVQW1Q8N7I0 195 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 STPG3Q8N7X2 389 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 UBAC2Q8NBM4 344 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 TMEM190Q8WZ59 177 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 ZNF414Q96IQ9 312 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 DUSP21Q9H596 190 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 C8orf4Q9NR00 106 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 MRPL27Q9P0M9 148 aaKnown RBP6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 TP53TG1Q9Y2A0 90 aa6.36□□□□□ -1.39
SHKBP1-220ENST00000599716 HMCN2Q8NDA2 5059 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 TRBV7-1A0A0A6YYK4 115 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 METTL21EPA6NDL7 271 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 TSPAN4O14817 238 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 TGOLN2O43493 480 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 DHFRP00374 187 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 OR13C7P0DN81 318 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 RAB3BP20337 219 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 DTYMKP23919 212 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 FXYD4P59646 89 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 WT1-ASQ06250 92 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 TRAM1Q15629 374 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 HACD4Q5VWC8 232 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 SLC25A24Q6NUK1 477 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 SLC38A6Q8IZM9 456 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 GBGT1Q8N5D6 347 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 OR51H1Q8NH63 302 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 VSTM2AQ8TAG5 236 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 CD300LFQ8TDQ1 290 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 NRG4Q8WWG1 115 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 RNF2Q99496 336 aa6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 HSD17B10Q99714 261 aaKnown RBP6.35□□□□□ -1.39
SHKBP1-220ENST00000599716 SPAG8Q99932 426 aaPredicted RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 150 ms