RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 HOGA1Q86XE5 327 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 BEST4Q8NFU0 473 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 PLEKHA3Q9HB20 300 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 TAS2R8Q9NYW2 309 aa10.26□□□□□ -0.77
TRIM28-211ENST00000597968 TNCP24821 2201 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 IGLV11-55A0A075B6I3 123 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 HMX3A6NHT5 357 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 OR2C1O95371 312 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 NQO2P16083 231 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 TGFBR1P36897 503 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 OR2B11Q5JQS5 317 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 ZNF57Q68EA5 555 aaPredicted RBP10.25□□□□□ -0.77
TRIM28-211ENST00000597968 VKORC1L1Q8N0U8 176 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 OR13F1Q8NGS4 319 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 GIMAP1Q8WWP7 306 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 SLC25A38Q96DW6 304 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 CCDC140Q96MF4 163 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 GPHA2Q96T91 129 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 PLEKHA2Q9HB19 425 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 DIABLOQ9NR28 239 aa10.25□□□□□ -0.77
TRIM28-211ENST00000597968 TRAV18A0A075B6X5 111 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 PPP5D1E7EU14 171 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 E7EUB6 86 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 PPYP01298 95 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 CD7P09564 240 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 C8orf88P0DMB2 117 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 MYOD1P15172 320 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 FCGR2CP31995 323 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 GUCA2BQ16661 112 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 TIMM50Q3ZCQ8 353 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 CROCCP3Q8IVE0 287 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 SPAG16Q8N0X2 631 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 GVQW1Q8N7I0 195 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 COMMD5Q9GZQ3 224 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 SRD5A3Q9H8P0 318 aa10.24□□□□□ -0.77
TRIM28-211ENST00000597968 MRPL27Q9P0M9 148 aaKnown RBP10.24□□□□□ -0.77
TRIM28-211ENST00000597968 EPPK1P58107 5090 aaKnown RBP10.24□□□□□ -0.77
TRIM28-211ENST00000597968 A0A1B0GW64 132 aa10.23□□□□□ -0.77
TRIM28-211ENST00000597968 TMEM213A2RRL7 107 aa10.23□□□□□ -0.77
TRIM28-211ENST00000597968 RBMY1BA6NDE4 496 aaKnown RBP10.23□□□□□ -0.77
TRIM28-211ENST00000597968 RBMY1EA6NEQ0 496 aaKnown RBP10.23□□□□□ -0.77
TRIM28-211ENST00000597968 NDUFB8O95169 186 aa10.23□□□□□ -0.77
TRIM28-211ENST00000597968 RBMY1DP0C7P1 496 aaKnown RBP10.23□□□□□ -0.77
TRIM28-211ENST00000597968 PTBP1P26599 531 aaKnown RBP eCLIP10.23□□□□□ -0.77
TRIM28-211ENST00000597968 CLEC19AQ6UXS0 136 aa10.23□□□□□ -0.77
TRIM28-211ENST00000597968 DEFB125Q8N687 156 aa10.23□□□□□ -0.77
TRIM28-211ENST00000597968 OR5AP2Q8NGF4 316 aa10.23□□□□□ -0.77
TRIM28-211ENST00000597968 VN1R17PQ8TDU5 208 aa10.23□□□□□ -0.77
TRIM28-211ENST00000597968 SECTM1Q8WVN6 248 aa10.23□□□□□ -0.77
TRIM28-211ENST00000597968 COMMD9Q9P000 198 aa10.23□□□□□ -0.77
TRIM28-211ENST00000597968 UFC1Q9Y3C8 167 aa10.23□□□□□ -0.77
TRIM28-211ENST00000597968 PLECQ15149 4684 aaKnown RBP10.22□□□□□ -0.77
TRIM28-211ENST00000597968 CLEC3BP05452 202 aa10.22□□□□□ -0.77
TRIM28-211ENST00000597968 AREGP15514 252 aa10.22□□□□□ -0.77
TRIM28-211ENST00000597968 OR2B8PP59922 312 aa10.22□□□□□ -0.77
TRIM28-211ENST00000597968 KCTD21Q4G0X4 260 aa10.22□□□□□ -0.77
TRIM28-211ENST00000597968 TMEM61Q8N0U2 210 aa10.22□□□□□ -0.77
TRIM28-211ENST00000597968 UXS1Q8NBZ7 420 aa10.22□□□□□ -0.77
TRIM28-211ENST00000597968 OR52B4Q8NGK2 314 aa10.22□□□□□ -0.77
TRIM28-211ENST00000597968 OR1L6Q8NGR2 347 aa10.22□□□□□ -0.77
TRIM28-211ENST00000597968 WDR89Q96FK6 387 aaPredicted RBP10.22□□□□□ -0.77
TRIM28-211ENST00000597968 QTRT1Q9BXR0 403 aaKnown RBP10.22□□□□□ -0.77
TRIM28-211ENST00000597968 HRASLSQ9HDD0 168 aa10.22□□□□□ -0.77
TRIM28-211ENST00000597968 CCL28Q9NRJ3 127 aa10.22□□□□□ -0.77
TRIM28-211ENST00000597968 BIRC6Q9NR09 4857 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 LOC102724200A0A096LPH7 203 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-211ENST00000597968 IGLC7A0M8Q6 106 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 ZNF320A2RRD8 509 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 UPK2O00526 184 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 HLA-AP01891 365 aaKnown RBP10.21□□□□□ -0.77
TRIM28-211ENST00000597968 LSM3P62310 102 aaKnown RBP10.21□□□□□ -0.77
TRIM28-211ENST00000597968 SPSB3Q6PJ21 355 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 RBPMS2Q6ZRY4 209 aaKnown RBP10.21□□□□□ -0.77
TRIM28-211ENST00000597968 SSX9Q7RTT3 188 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 SLC38A6Q8IZM9 456 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 ZNF502Q8TBZ5 544 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 SPAG8Q99932 426 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-211ENST00000597968 FAM110AQ9BQ89 295 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 GGTLC1Q9BX51 225 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 ZNF436Q9C0F3 470 aaPredicted RBP10.21□□□□□ -0.77
TRIM28-211ENST00000597968 SLC5A7Q9GZV3 580 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 C5orf66Q9H5L9 145 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 AUNIPQ9H7T9 357 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 MLXQ9UH92 298 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 TP53TG1Q9Y2A0 90 aa10.21□□□□□ -0.77
TRIM28-211ENST00000597968 HYDINQ4G0P3 5121 aa10.21□□□□□ -0.78
TRIM28-211ENST00000597968 MEIS3P1A6NDR6 274 aa10.2□□□□□ -0.78
TRIM28-211ENST00000597968 CGB1A6NKQ9 187 aa10.2□□□□□ -0.78
TRIM28-211ENST00000597968 TNFSF12O43508 249 aa10.2□□□□□ -0.78
TRIM28-211ENST00000597968 XRCC3O43542 346 aa10.2□□□□□ -0.78
TRIM28-211ENST00000597968 ATF4P18848 351 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-211ENST00000597968 ERVK-16P61578 105 aa10.2□□□□□ -0.78
TRIM28-211ENST00000597968 PLET1Q6UQ28 207 aa10.2□□□□□ -0.78
TRIM28-211ENST00000597968 DHRS11Q6UWP2 260 aa10.2□□□□□ -0.78
TRIM28-211ENST00000597968 WFDC3Q8IUB2 231 aa10.2□□□□□ -0.78
TRIM28-211ENST00000597968 GDPD1Q8N9F7 314 aa10.2□□□□□ -0.78
TRIM28-211ENST00000597968 DMBX1Q8NFW5 382 aa10.2□□□□□ -0.78
TRIM28-211ENST00000597968 S100A16Q96FQ6 103 aaKnown RBP10.2□□□□□ -0.78
TRIM28-211ENST00000597968 BSCL2Q96G97 398 aaPredicted RBP10.2□□□□□ -0.78
TRIM28-211ENST00000597968 FAM212BQ9NTI7 297 aaPredicted RBP10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms