RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 PSMB6P28072 239 aa15.79■□□□□ 0.12
VPS53-216ENST00000574029 VBP1P61758 197 aa15.79■□□□□ 0.12
VPS53-216ENST00000574029 NCS1P62166 190 aa15.79■□□□□ 0.12
VPS53-216ENST00000574029 CTF1Q16619 201 aa15.79■□□□□ 0.12
VPS53-216ENST00000574029 ZNF57Q68EA5 555 aaPredicted RBP15.79■□□□□ 0.12
VPS53-216ENST00000574029 MFSD4AQ8N468 514 aa15.79■□□□□ 0.12
VPS53-216ENST00000574029 TCTEX1D2Q8WW35 142 aa15.79■□□□□ 0.12
VPS53-216ENST00000574029 SLC25A38Q96DW6 304 aa15.79■□□□□ 0.12
VPS53-216ENST00000574029 MLXQ9UH92 298 aa15.79■□□□□ 0.12
VPS53-216ENST00000574029 SELENOKQ9Y6D0 94 aa15.79■□□□□ 0.12
VPS53-216ENST00000574029 S4R3C0 116 aa15.79■□□□□ 0.12
VPS53-216ENST00000574029 GABARAPO95166 117 aa15.78■□□□□ 0.12
VPS53-216ENST00000574029 DHFRP00374 187 aa15.78■□□□□ 0.12
VPS53-216ENST00000574029 AREGP15514 252 aa15.78■□□□□ 0.12
VPS53-216ENST00000574029 CTRB1P17538 263 aa15.78■□□□□ 0.12
VPS53-216ENST00000574029 FAM106AQ4KMX7 169 aa15.78■□□□□ 0.12
VPS53-216ENST00000574029 CTRB2Q6GPI1 263 aa15.78■□□□□ 0.12
VPS53-216ENST00000574029 NUDCD2Q8WVJ2 157 aa15.78■□□□□ 0.12
VPS53-216ENST00000574029 EEF1AKMT3Q96AZ1 226 aa15.78■□□□□ 0.12
VPS53-216ENST00000574029 ANXA10Q9UJ72 324 aa15.78■□□□□ 0.12
VPS53-216ENST00000574029 HIST1H1BP16401 226 aaKnown RBP15.77■□□□□ 0.12
VPS53-216ENST00000574029 GPR107Q5VW38 600 aa15.77■□□□□ 0.12
VPS53-216ENST00000574029 ZNF66Q6ZN08 573 aa15.77■□□□□ 0.12
VPS53-216ENST00000574029 GPR141Q7Z602 305 aa15.77■□□□□ 0.12
VPS53-216ENST00000574029 UXS1Q8NBZ7 420 aa15.77■□□□□ 0.12
VPS53-216ENST00000574029 OR52B4Q8NGK2 314 aa15.77■□□□□ 0.12
VPS53-216ENST00000574029 OVOL2Q9BRP0 275 aa15.77■□□□□ 0.12
VPS53-216ENST00000574029 GGTLC1Q9BX51 225 aa15.77■□□□□ 0.12
VPS53-216ENST00000574029 NAA50Q9GZZ1 169 aaKnown RBP15.77■□□□□ 0.12
VPS53-216ENST00000574029 TAS2R8Q9NYW2 309 aa15.77■□□□□ 0.12
VPS53-216ENST00000574029 IGLV11-55A0A075B6I3 123 aa15.76■□□□□ 0.11
VPS53-216ENST00000574029 ZNF320A2RRD8 509 aa15.76■□□□□ 0.11
VPS53-216ENST00000574029 TMEM235A6NFC5 223 aa15.76■□□□□ 0.11
VPS53-216ENST00000574029 CGB1A6NKQ9 187 aa15.76■□□□□ 0.11
VPS53-216ENST00000574029 SSX5O60225 188 aa15.76■□□□□ 0.11
VPS53-216ENST00000574029 HRASP01112 189 aa15.76■□□□□ 0.11
VPS53-216ENST00000574029 RPL8P62917 257 aaKnown RBP15.76■□□□□ 0.11
VPS53-216ENST00000574029 OR4A47Q6IF82 309 aa15.76■□□□□ 0.11
VPS53-216ENST00000574029 TRBV7-1A0A0A6YYK4 115 aa15.75■□□□□ 0.11
VPS53-216ENST00000574029 MYOD1P15172 320 aa15.75■□□□□ 0.11
VPS53-216ENST00000574029 ANKRD55Q3KP44 614 aa15.75■□□□□ 0.11
VPS53-216ENST00000574029 SSX9Q7RTT3 188 aa15.75■□□□□ 0.11
VPS53-216ENST00000574029 GPHA2Q96T91 129 aa15.75■□□□□ 0.11
VPS53-216ENST00000574029 DIABLOQ9NR28 239 aa15.75■□□□□ 0.11
VPS53-216ENST00000574029 LOC102724200A0A096LPH7 203 aaPredicted RBP15.74■□□□□ 0.11
VPS53-216ENST00000574029 MFSD2BA6NFX1 497 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 SCAF4O95104 1147 aaKnown RBP15.74■□□□□ 0.11
VPS53-216ENST00000574029 REG1AP05451 166 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 C8orf88P0DMB2 117 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 HLA-GP17693 338 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 RPL5P46777 297 aaKnown RBP15.74■□□□□ 0.11
VPS53-216ENST00000574029 GNG2P59768 71 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 MSMO1Q15800 293 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 OR4A5Q8NH83 315 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 CXorf58Q96LI9 332 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 CMTM3Q96MX0 182 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 KRTAP17-1Q9BYP8 105 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 BET1LQ9NYM9 111 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 ALMS1Q8TCU4 4167 aa15.74■□□□□ 0.11
VPS53-216ENST00000574029 PLECQ15149 4684 aaKnown RBP15.74■□□□□ 0.11
VPS53-216ENST00000574029 TRAV18A0A075B6X5 111 aa15.73■□□□□ 0.11
VPS53-216ENST00000574029 TRAV25A0A0B4J276 109 aa15.73■□□□□ 0.11
VPS53-216ENST00000574029 CLEC3BP05452 202 aa15.73■□□□□ 0.11
VPS53-216ENST00000574029 DEFA4P12838 97 aa15.73■□□□□ 0.11
VPS53-216ENST00000574029 RORCP51449 518 aa15.73■□□□□ 0.11
VPS53-216ENST00000574029 TM4SF20Q53R12 229 aa15.73■□□□□ 0.11
VPS53-216ENST00000574029 UBE2NLQ5JXB2 153 aa15.73■□□□□ 0.11
VPS53-216ENST00000574029 BTNL8Q6UX41 500 aa15.73■□□□□ 0.11
VPS53-216ENST00000574029 UNQ9165/PRO28630Q6UXU0 137 aa15.73■□□□□ 0.11
VPS53-216ENST00000574029 LINC00476Q8WZB0 136 aa15.73■□□□□ 0.11
VPS53-216ENST00000574029 MARC2Q969Z3 335 aa15.73■□□□□ 0.11
VPS53-216ENST00000574029 S100A16Q96FQ6 103 aaKnown RBP15.73■□□□□ 0.11
VPS53-216ENST00000574029 XRCC3O43542 346 aa15.72■□□□□ 0.11
VPS53-216ENST00000574029 OR2B8PP59922 312 aa15.72■□□□□ 0.11
VPS53-216ENST00000574029 AIFM2Q9BRQ8 373 aa15.72■□□□□ 0.11
VPS53-216ENST00000574029 AUNIPQ9H7T9 357 aa15.72■□□□□ 0.11
VPS53-216ENST00000574029 CCL28Q9NRJ3 127 aa15.72■□□□□ 0.11
VPS53-216ENST00000574029 RBFOX2O43251 390 aaKnown RBP eCLIP15.71■□□□□ 0.118e-7■■□□□ 13.4
VPS53-216ENST00000574029 TNFSF12O43508 249 aa15.71■□□□□ 0.11
VPS53-216ENST00000574029 ELLP55199 621 aaPredicted RBP15.71■□□□□ 0.11
VPS53-216ENST00000574029 WFDC3Q8IUB2 231 aa15.71■□□□□ 0.11
VPS53-216ENST00000574029 SAMD12Q8N8I0 201 aa15.71■□□□□ 0.11
VPS53-216ENST00000574029 ZBTB34Q8NCN2 500 aa15.71■□□□□ 0.11
VPS53-216ENST00000574029 ZNF502Q8TBZ5 544 aa15.71■□□□□ 0.11
VPS53-216ENST00000574029 BCL7BQ9BQE9 202 aa15.71■□□□□ 0.11
VPS53-216ENST00000574029 MRPL27Q9P0M9 148 aaKnown RBP15.71■□□□□ 0.11
VPS53-216ENST00000574029 IGLC7A0M8Q6 106 aa15.7■□□□□ 0.1
VPS53-216ENST00000574029 FCGR2CP31995 323 aa15.7■□□□□ 0.1
VPS53-216ENST00000574029 GPR183P32249 361 aa15.7■□□□□ 0.1
VPS53-216ENST00000574029 TMBIM6P55061 237 aa15.7■□□□□ 0.1
VPS53-216ENST00000574029 POU2AF1Q16633 256 aa15.7■□□□□ 0.1
VPS53-216ENST00000574029 ZNF585BQ52M93 769 aa15.7■□□□□ 0.1
VPS53-216ENST00000574029 RBPMS2Q6ZRY4 209 aaKnown RBP15.7■□□□□ 0.1
VPS53-216ENST00000574029 SPAG16Q8N0X2 631 aa15.7■□□□□ 0.1
VPS53-216ENST00000574029 BEST4Q8NFU0 473 aa15.7■□□□□ 0.1
VPS53-216ENST00000574029 OR1L6Q8NGR2 347 aa15.7■□□□□ 0.1
VPS53-216ENST00000574029 SECTM1Q8WVN6 248 aa15.7■□□□□ 0.1
VPS53-216ENST00000574029 HRASLSQ9HDD0 168 aa15.7■□□□□ 0.1
VPS53-216ENST00000574029 ZNF182P17025 639 aaPredicted RBP15.69■□□□□ 0.1
VPS53-216ENST00000574029 TAS2R31P59538 309 aa15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms