RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 FAM106AQ4KMX7 169 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 OR4A47Q6IF82 309 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 SSX9Q7RTT3 188 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 GVQW1Q8N7I0 195 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 OR5H6Q8NGV6 325 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 EEF1AKMT3Q96AZ1 226 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 FAM110AQ9BQ89 295 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 ETV7Q9Y603 341 aa12.86□□□□□ -0.35
CLN3-216ENST00000565316 TRAV18A0A075B6X5 111 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 PPYP01298 95 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 CLEC2LP0C7M8 214 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 PTHLHP12272 177 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 MYOD1P15172 320 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 OR2B8PP59922 312 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 ARPC4P59998 168 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 POU2AF1Q16633 256 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 TIMM50Q3ZCQ8 353 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 ZNF773Q6PK81 442 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 SPAG16Q8N0X2 631 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 OR13F1Q8NGS4 319 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 SECTM1Q8WVN6 248 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 CACNG8Q8WXS5 425 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 MLXQ9UH92 298 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 S4R3C0 116 aa12.85□□□□□ -0.35
CLN3-216ENST00000565316 TRBV7-1A0A0A6YYK4 115 aa12.84□□□□□ -0.35
CLN3-216ENST00000565316 TNFSF12O43508 249 aa12.84□□□□□ -0.35
CLN3-216ENST00000565316 CLEC3BP05452 202 aa12.84□□□□□ -0.35
CLN3-216ENST00000565316 FGF2P09038 288 aa12.84□□□□□ -0.35
CLN3-216ENST00000565316 TAS2R31P59538 309 aa12.84□□□□□ -0.35
CLN3-216ENST00000565316 ZNF57Q68EA5 555 aaPredicted RBP12.84□□□□□ -0.35
CLN3-216ENST00000565316 SLC16A13Q7RTY0 426 aa12.84□□□□□ -0.35
CLN3-216ENST00000565316 TMEM61Q8N0U2 210 aa12.84□□□□□ -0.35
CLN3-216ENST00000565316 AUNIPQ9H7T9 357 aa12.84□□□□□ -0.35
CLN3-216ENST00000565316 IGLC7A0M8Q6 106 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 MFSD2BA6NFX1 497 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 HPRT1P00492 218 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 REG1AP05451 166 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 C8orf88P0DMB2 117 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 DEFA4P12838 97 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 MXD1Q05195 221 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 UXS1Q8NBZ7 420 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 GIMAP1Q8WWP7 306 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 CXorf58Q96LI9 332 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 SRSF8Q9BRL6 282 aaKnown RBP12.83□□□□□ -0.36
CLN3-216ENST00000565316 SLC5A7Q9GZV3 580 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 RNF167Q9H6Y7 350 aa12.83□□□□□ -0.36
CLN3-216ENST00000565316 TRAV3A0A0B4J244 114 aa12.82□□□□□ -0.36
CLN3-216ENST00000565316 ZNF320A2RRD8 509 aa12.82□□□□□ -0.36
CLN3-216ENST00000565316 SULT1C2O00338 296 aa12.82□□□□□ -0.36
CLN3-216ENST00000565316 UPK2O00526 184 aa12.82□□□□□ -0.36
CLN3-216ENST00000565316 NQO2P16083 231 aa12.82□□□□□ -0.36
CLN3-216ENST00000565316 ZNF502Q8TBZ5 544 aa12.82□□□□□ -0.36
CLN3-216ENST00000565316 MARC2Q969Z3 335 aa12.82□□□□□ -0.36
CLN3-216ENST00000565316 HRASLSQ9HDD0 168 aa12.82□□□□□ -0.36
CLN3-216ENST00000565316 TRAV25A0A0B4J276 109 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 TMEM127O75204 238 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 JTBO76095 146 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 PTBP1P26599 531 aaKnown RBP eCLIP12.81□□□□□ -0.36
CLN3-216ENST00000565316 CBX5P45973 191 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 CATR1Q13166 79 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 TM4SF20Q53R12 229 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 IDNKQ5T6J7 187 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 UNQ9165/PRO28630Q6UXU0 137 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 ZNF818PQ6ZRF7 136 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 OR5AP2Q8NGF4 316 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 PLEKHA2Q9HB19 425 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 DIABLOQ9NR28 239 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 SELENOKQ9Y6D0 94 aa12.81□□□□□ -0.36
CLN3-216ENST00000565316 ELLP55199 621 aaPredicted RBP12.8□□□□□ -0.36
CLN3-216ENST00000565316 ANKRD55Q3KP44 614 aa12.8□□□□□ -0.36
CLN3-216ENST00000565316 OR52B4Q8NGK2 314 aa12.8□□□□□ -0.36
CLN3-216ENST00000565316 CD300LFQ8TDQ1 290 aa12.8□□□□□ -0.36
CLN3-216ENST00000565316 ZNF436Q9C0F3 470 aaPredicted RBP12.8□□□□□ -0.36
CLN3-216ENST00000565316 COMMD5Q9GZQ3 224 aa12.8□□□□□ -0.36
CLN3-216ENST00000565316 Q9H521 79 aa12.8□□□□□ -0.36
CLN3-216ENST00000565316 TMEM140Q9NV12 185 aa12.8□□□□□ -0.36
CLN3-216ENST00000565316 LOC100506127A0A0U1RQW1 187 aa12.79□□□□□ -0.36
CLN3-216ENST00000565316 SCAF4O95104 1147 aaKnown RBP12.79□□□□□ -0.36
CLN3-216ENST00000565316 ATP6V1G2O95670 118 aa12.79□□□□□ -0.36
CLN3-216ENST00000565316 GNRHRP30968 328 aa12.79□□□□□ -0.36
CLN3-216ENST00000565316 GPR183P32249 361 aa12.79□□□□□ -0.36
CLN3-216ENST00000565316 FXYD4P59646 89 aa12.79□□□□□ -0.36
CLN3-216ENST00000565316 THOC7Q6I9Y2 204 aaKnown RBP12.79□□□□□ -0.36
CLN3-216ENST00000565316 BTNL8Q6UX41 500 aa12.79□□□□□ -0.36
CLN3-216ENST00000565316 VN1R17PQ8TDU5 208 aa12.79□□□□□ -0.36
CLN3-216ENST00000565316 OVOL2Q9BRP0 275 aa12.79□□□□□ -0.36
CLN3-216ENST00000565316 GGTLC1Q9BX51 225 aa12.79□□□□□ -0.36
CLN3-216ENST00000565316 QTRT1Q9BXR0 403 aaKnown RBP12.79□□□□□ -0.36
CLN3-216ENST00000565316 COMMD9Q9P000 198 aa12.79□□□□□ -0.36
CLN3-216ENST00000565316 THYN1Q9P016 225 aa12.79□□□□□ -0.36
CLN3-216ENST00000565316 MRPL27Q9P0M9 148 aaKnown RBP12.79□□□□□ -0.36
CLN3-216ENST00000565316 S1PR2O95136 353 aa12.78□□□□□ -0.36
CLN3-216ENST00000565316 DHRS11Q6UWP2 260 aa12.78□□□□□ -0.36
CLN3-216ENST00000565316 CADM3Q8N126 398 aa12.78□□□□□ -0.36
CLN3-216ENST00000565316 GDPD1Q8N9F7 314 aa12.78□□□□□ -0.36
CLN3-216ENST00000565316 OR10W1Q8NGF6 305 aa12.78□□□□□ -0.36
CLN3-216ENST00000565316 OR51H1Q8NH63 302 aa12.78□□□□□ -0.36
CLN3-216ENST00000565316 UFC1Q9Y3C8 167 aa12.78□□□□□ -0.36
CLN3-216ENST00000565316 LOC102724200A0A096LPH7 203 aaPredicted RBP12.77□□□□□ -0.37
CLN3-216ENST00000565316 XRCC3O43542 346 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 129.9 ms