RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 CSNK1G2-AS1Q8NCQ2 148 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 OR1S1Q8NH92 325 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 OR13C6PQ8NH95 151 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 GPR119Q8TDV5 335 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 C11orf40Q8WZ69 217 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 MRPL48Q96GC5 212 aaKnown RBP3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 DIRAS2Q96HU8 199 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 SMIM8Q96KF7 97 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 TEX37Q96LM6 180 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 MARVELD1Q9BSK0 173 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 ALX4Q9H161 411 aaPredicted RBP3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 PROCRQ9UNN8 238 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 BAIAP2Q9UQB8 552 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 ACACBO00763 2458 aa3.92□□□□□ -1.78
VPS35P1-201ENST00000563400 TMED7-TICAM2A0A0A6YYA0 188 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 LOC102725191A0A1B0GVB3 256 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 LINC00587B1AMM8 73 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 EEF1E1-BLOC1S5C9J1V9 151 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 KPNA4O00629 521 aaPredicted RBP3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 MYL12BO14950 172 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 EEF1E1O43324 174 aaKnown RBP3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 GADD45GO95257 159 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 MT-CO2P00403 227 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 IFNGP01579 166 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 RPS4Y1P22090 263 aaKnown RBP3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 AGTR1P30556 359 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 TCTAP57738 103 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 ESRRGP62508 458 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 HIST1H3AP68431 136 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 H3F3AP84243 136 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 PRDX4Q13162 271 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 SURF2Q15527 256 aaPredicted RBP3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 PLPPR5Q32ZL2 321 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 ZNF506Q5JVG8 444 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 FBXW12Q6X9E4 464 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 HIST2H3AQ71DI3 136 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 C1orf158Q8N1D5 194 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 LINC00337Q8N6G1 96 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 UBAC2Q8NBM4 344 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 OR2G3Q8NGZ4 309 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 GALNT14Q96FL9 552 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 GNB1LQ9BYB4 327 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 CCL28Q9NRJ3 127 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 TAS2R1Q9NYW7 299 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 OR52A1Q9UKL2 312 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 ZNF835Q9Y2P0 537 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 YTHDF2Q9Y5A9 579 aaKnown RBP3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 NUP210LQ5VU65 1888 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 VPS13AQ96RL7 3174 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 DSPPQ9NZW4 1301 aa3.91□□□□□ -1.78
VPS35P1-201ENST00000563400 IGKV1-27A0A075B6S5 117 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 IGHV1-69DA0A0B4J2H0 117 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 FAM236DA0A1B0GTK5 79 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 DHRS12A0PJE2 317 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 FFAR1O14842 300 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 IGHV3-48P01763 117 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 APOC1P02654 83 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 CLPSP04118 112 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 PFN1P07737 140 aaKnown RBP3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 FAM236CP0DP71 79 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 TAS2R19P59542 299 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 UBE2NP61088 152 aaKnown RBP3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 PCBD1P61457 104 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 ZNF117Q03924 483 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 SRSF4Q08170 494 aaKnown RBP3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 PMAIP1Q13794 54 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 FAM78BQ5VT40 261 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 C1orf140Q5VVS0 124 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 LCN8Q6JVE9 175 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 OR5J2Q8NH18 312 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 GNPDA2Q8TDQ7 276 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 VN1R17PQ8TDU5 208 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 MAL2Q969L2 176 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 AURKBQ96GD4 344 aaPredicted RBP3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 LINC01587Q99440 93 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 RNASE7Q9H1E1 156 aaKnown RBP3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 FAIMQ9NVQ4 179 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 AP4S1Q9Y587 144 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 ENPP4Q9Y6X5 453 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 WDR87Q6ZQQ6 2873 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 USP34Q70CQ2 3546 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 CNTRLQ7Z7A1 2325 aa3.9□□□□□ -1.78
VPS35P1-201ENST00000563400 IGHV7-81A0A0B4J1V7 117 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 PQLC2LA1A4F0 135 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 ARRDC5A6NEK1 342 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 BHLHE40O14503 412 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 CCNKO75909 580 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 KBTBD11O94819 623 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 NTN1O95631 604 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 CA2P00918 260 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 OR4A8P0C604 315 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 IGHV3-43DP0DP04 118 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 POLR2IP36954 125 aaKnown RBP3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 H2BFSP57053 126 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 RIPPLY3P57055 190 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 RHOBP62745 196 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 GUCA2BQ16661 112 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 C16orf47Q6ZP98 133 aaPredicted RBP3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 ZNF493Q6ZR52 646 aa3.9□□□□□ -1.79
VPS35P1-201ENST00000563400 SLC16A13Q7RTY0 426 aa3.9□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 62.6 ms