RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 NOL4LQ96MY1 436 aaPredicted RBP13.64□□□□□ -0.23
CUX1-213ENST00000549414 METRNQ9UJH8 293 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 PPIAL4CA0A0B4J2A2 164 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 RRHO14718 337 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 PPIAL4GP0DN37 164 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 ID3Q02535 119 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 ZNF525Q8N782 197 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 CYTL1Q9NRR1 136 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 DNASE2O00115 360 aaPredicted RBP13.64□□□□□ -0.23
CUX1-213ENST00000549414 OR1L6Q8NGR2 347 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 ZNF596Q8TC21 504 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 TMEM106BQ9NUM4 274 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 TMSB15BA0A087X1C1 80 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 SLC31A2O15432 143 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 NAPSAO96009 420 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 LGALS7P47929 136 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 NPIPB3Q92617 1050 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 GTF3AQ92664 365 aaKnown RBP13.64□□□□□ -0.23
CUX1-213ENST00000549414 PERPQ96FX8 193 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 RNF2Q99496 336 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 NPCDR1Q9BY65 106 aa13.64□□□□□ -0.23
CUX1-213ENST00000549414 LYNX1G3V0Z9 82 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 LYNX1P0DP58 116 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 LINC00205P59089 165 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 HOXA4Q00056 320 aaPredicted RBP13.63□□□□□ -0.23
CUX1-213ENST00000549414 CARHSP1Q9Y2V2 147 aaKnown RBP13.63□□□□□ -0.23
CUX1-213ENST00000549414 LTBP2Q14767 1821 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 COL8A1P27658 744 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 MC5RP33032 325 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 C1RLQ9NZP8 487 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 LOC102723971A0A1B0GUV8 181 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 GATA2P23769 480 aaPredicted RBP13.63□□□□□ -0.23
CUX1-213ENST00000549414 LRRC75BQ2VPJ9 315 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 OR4A47Q6IF82 309 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 FOXL2NBQ6ZUU3 175 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 OR4D5Q8NGN0 318 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 OR9G1Q8NH87 305 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 ARFGEF3Q5TH69 2177 aa13.63□□□□□ -0.23
CUX1-213ENST00000549414 IGHV3-35A0A0C4DH35 117 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 KBTBD11-OT1A0A1B0GTJ5 212 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 C20orf204Q6ZNR8 217 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 STPG3Q8N7X2 389 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 STARD4Q96DR4 205 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 TRAV34A0A0B4J273 112 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 USF1P22415 310 aaPredicted RBP13.62□□□□□ -0.23
CUX1-213ENST00000549414 ERVFRD-1P60508 538 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 PNKDQ8N490 385 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 OR2D3Q8NGH3 330 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 OR4C13Q8NGP0 309 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 PSMG3Q9BT73 122 aaPredicted RBP13.62□□□□□ -0.23
CUX1-213ENST00000549414 MYO9AB2RTY4 2548 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 PCNX3Q9H6A9 2034 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 YLPM1P49750 1951 aaKnown RBP13.62□□□□□ -0.23
CUX1-213ENST00000549414 HYPMO75409 117 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 CRYBB3P26998 211 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 FXYD3Q14802 87 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 IQCJQ1A5X6 159 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 GPR61Q9BZJ8 451 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 PARD6AQ9NPB6 346 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 J3KRW8 73 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 FGF16O43320 207 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 ZNF137PP52743 207 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 MMD2Q8IY49 270 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 CYYR1Q96J86 154 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 EAF1Q96JC9 268 aaPredicted RBP13.62□□□□□ -0.23
CUX1-213ENST00000549414 NABP2Q9BQ15 211 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 MALRD1Q5VYJ5 2156 aa13.62□□□□□ -0.23
CUX1-213ENST00000549414 SRP19P09132 144 aaKnown RBP13.61□□□□□ -0.23
CUX1-213ENST00000549414 S100A4P26447 101 aaKnown RBP13.61□□□□□ -0.23
CUX1-213ENST00000549414 HTR1DP28221 377 aa13.61□□□□□ -0.23
CUX1-213ENST00000549414 RPL29P47914 159 aaKnown RBP13.61□□□□□ -0.23
CUX1-213ENST00000549414 WFIKKN1Q96NZ8 548 aa13.61□□□□□ -0.23
CUX1-213ENST00000549414 MOSP00540 346 aa13.61□□□□□ -0.23
CUX1-213ENST00000549414 PQLC2Q6ZP29 291 aa13.61□□□□□ -0.23
CUX1-213ENST00000549414 EIF4E3Q8N5X7 224 aaKnown RBP13.61□□□□□ -0.23
CUX1-213ENST00000549414 C17orf100A8MU93 164 aa13.61□□□□□ -0.23
CUX1-213ENST00000549414 HTN1P15515 57 aa13.61□□□□□ -0.23
CUX1-213ENST00000549414 ZNF506Q5JVG8 444 aa13.61□□□□□ -0.23
CUX1-213ENST00000549414 VAMP8Q9BV40 100 aa13.61□□□□□ -0.23
CUX1-213ENST00000549414 ZNF503-AS2A6NEH8 195 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 SMAD7O15105 426 aaKnown RBP13.6□□□□□ -0.23
CUX1-213ENST00000549414 MFAP2P55001 183 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 PCSK4Q6UW60 755 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 RNF166Q96A37 237 aaPredicted RBP13.6□□□□□ -0.23
CUX1-213ENST00000549414 SNRNP40Q96DI7 357 aaKnown RBP13.6□□□□□ -0.23
CUX1-213ENST00000549414 WIPF3A6NGB9 483 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 P01737 135 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 DOLPP1Q86YN1 238 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 Q8WTZ3 238 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 MRPL20Q9BYC9 149 aaKnown RBP13.6□□□□□ -0.23
CUX1-213ENST00000549414 SMIM6P0DI80 62 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 RPL30P62888 115 aaKnown RBP13.6□□□□□ -0.23
CUX1-213ENST00000549414 ZNF383Q8NA42 475 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 SPTBN4Q9H254 2564 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 SAA2-SAA4A0A096LPE2 208 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 SAA2P0DJI9 122 aaPredicted RBP13.6□□□□□ -0.23
CUX1-213ENST00000549414 IGFBP2P18065 325 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 MORN2Q502X0 79 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 LRTM2Q8N967 370 aa13.6□□□□□ -0.23
CUX1-213ENST00000549414 P2RX4Q99571 388 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms