RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 VAX2Q9UIW0 290 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 FOXA2Q9Y261 457 aaPredicted RBP13.33□□□□□ -0.28
COL4A1-204ENST00000543140 OR51B2Q9Y5P1 312 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 CTXND1A0A1B0GTU2 59 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 B9A039 149 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 MBP02144 154 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 CHRNB4P30926 498 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 TREML4Q6UXN2 200 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 ACTR3CQ9C0K3 210 aaPredicted RBP13.33□□□□□ -0.28
COL4A1-204ENST00000543140 ENY2Q9NPA8 101 aa13.33□□□□□ -0.28
COL4A1-204ENST00000543140 PRSS46E5RG02 174 aa13.32□□□□□ -0.28
COL4A1-204ENST00000543140 OR2C1O95371 312 aa13.32□□□□□ -0.28
COL4A1-204ENST00000543140 LOXP28300 417 aaPredicted RBP13.32□□□□□ -0.28
COL4A1-204ENST00000543140 ZNF833PQ6ZTB9 187 aa13.32□□□□□ -0.28
COL4A1-204ENST00000543140 TVP23CQ96ET8 276 aa13.32□□□□□ -0.28
COL4A1-204ENST00000543140 TACC2O95359 2948 aa13.32□□□□□ -0.28
COL4A1-204ENST00000543140 LY86O95711 162 aa13.32□□□□□ -0.28
COL4A1-204ENST00000543140 EFNB3Q15768 340 aa13.32□□□□□ -0.28
COL4A1-204ENST00000543140 MUC15Q8N387 334 aa13.32□□□□□ -0.28
COL4A1-204ENST00000543140 SLC24A4Q8NFF2 622 aa13.32□□□□□ -0.28
COL4A1-204ENST00000543140 OR10X1Q8NGY0 326 aa13.32□□□□□ -0.28
COL4A1-204ENST00000543140 TUBA4BQ9H853 241 aa13.32□□□□□ -0.28
COL4A1-204ENST00000543140 SPTBN1Q01082 2364 aaKnown RBP13.32□□□□□ -0.28
COL4A1-204ENST00000543140 MALRD1Q5VYJ5 2156 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 CA2P00918 260 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 IFNA1P01562 189 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 MT-ND4LP03901 98 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 NPY1RP25929 384 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 PAX6P26367 422 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 RAB13P51153 203 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 ST6GALNAC3Q8NDV1 305 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 OR10A7Q8NGE5 316 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 PATZ1Q9HBE1 687 aaKnown RBP13.31□□□□□ -0.28
COL4A1-204ENST00000543140 J3QR06 171 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 SAA1P0DJI8 122 aaPredicted RBP13.31□□□□□ -0.28
COL4A1-204ENST00000543140 COL8A2P25067 703 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 DLX1P56177 255 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 ADORA2A-AS1P86434 159 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 PRB3Q04118 309 aaPredicted RBP13.31□□□□□ -0.28
COL4A1-204ENST00000543140 POU2AF1Q16633 256 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 MGST2Q99735 147 aa13.31□□□□□ -0.28
COL4A1-204ENST00000543140 UPK2O00526 184 aa13.3□□□□□ -0.28
COL4A1-204ENST00000543140 CD81P60033 236 aa13.3□□□□□ -0.28
COL4A1-204ENST00000543140 ACOT6Q3I5F7 207 aaPredicted RBP13.3□□□□□ -0.28
COL4A1-204ENST00000543140 RBMS3Q6XE24 437 aaKnown RBP13.3□□□□□ -0.28
COL4A1-204ENST00000543140 CYB5BO43169 146 aa13.3□□□□□ -0.28
COL4A1-204ENST00000543140 CDC34P49427 236 aaPredicted RBP13.3□□□□□ -0.28
COL4A1-204ENST00000543140 MEF2BQ02080 365 aaPredicted RBP13.3□□□□□ -0.28
COL4A1-204ENST00000543140 HABP2Q14520 560 aaPredicted RBP13.3□□□□□ -0.28
COL4A1-204ENST00000543140 ARSJQ5FYB0 599 aaPredicted RBP13.3□□□□□ -0.28
COL4A1-204ENST00000543140 MIC13Q5XKP0 118 aa13.3□□□□□ -0.28
COL4A1-204ENST00000543140 SSMEM1Q8WWF3 244 aa13.3□□□□□ -0.28
COL4A1-204ENST00000543140 PRNDQ9UKY0 176 aa13.3□□□□□ -0.28
COL4A1-204ENST00000543140 PLXNB1O43157 2135 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 H0YJW9 148 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 RAB5AP20339 215 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 ZNF674Q2M3X9 581 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 SLC35E3Q7Z769 313 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 HARBI1Q96MB7 349 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 URGCP-MRPS24S4R325 110 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 KBTBD11O94819 623 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 APOA2P02652 100 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 IL6RP08887 468 aaPredicted RBP13.29□□□□□ -0.28
COL4A1-204ENST00000543140 PSMB3P49720 205 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 FBXL19-AS1Q494R0 122 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 ZNF343Q6P1L6 599 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 C1orf159Q96HA4 380 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 P2RX4Q99571 388 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 PLEKHA3Q9HB20 300 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 KAAG1Q9UBP8 84 aa13.29□□□□□ -0.28
COL4A1-204ENST00000543140 TEX50A0A1B0GTY4 177 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 YIF1AO95070 293 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 DLX6P56179 175 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 OR10W1Q8NGF6 305 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 FAM122AQ96E09 287 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 GGACTQ9BVM4 153 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 GGTLC1Q9BX51 225 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 PAGE4O60829 102 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 MPDU1O75352 247 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 LY6HO94772 140 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 FOLR2P14207 255 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 TMEM155Q4W5P6 130 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 OR4F5Q8NH21 305 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 OR4F4Q96R69 305 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 PXMP4Q9Y6I8 212 aa13.28□□□□□ -0.28
COL4A1-204ENST00000543140 HRNRQ86YZ3 2850 aaPredicted RBP13.27□□□□□ -0.28
COL4A1-204ENST00000543140 A0A1W2PPV4 95 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 C1orf196B1AJZ1 125 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 C1QTNF9P0C862 333 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 PRCDQ00LT1 54 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 LY6DQ14210 128 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 OR5AN1Q8NGI8 311 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 RPUSD4Q96CM3 377 aaKnown RBP13.27□□□□□ -0.29
COL4A1-204ENST00000543140 FLYWCH2Q96CP2 140 aaKnown RBP13.27□□□□□ -0.29
COL4A1-204ENST00000543140 NPVFQ9HCQ7 196 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 ZNF98A6NK75 572 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 IGHV1-8P0DP01 117 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 OPRK1P41145 380 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 RAB5BP61020 215 aa13.27□□□□□ -0.29
COL4A1-204ENST00000543140 ZNF672Q499Z4 452 aaPredicted RBP13.27□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms