RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 Q6ZRM9 215 aa6.74□□□□□ -1.33
USP28-205ENST00000537706 NOXA1Q86UR1 476 aa6.74□□□□□ -1.33
USP28-205ENST00000537706 CDH26Q8IXH8 852 aa6.74□□□□□ -1.33
USP28-205ENST00000537706 PLPPR1Q8TBJ4 325 aa6.74□□□□□ -1.33
USP28-205ENST00000537706 GIMAP1Q8WWP7 306 aa6.74□□□□□ -1.33
USP28-205ENST00000537706 MRPS24Q96EL2 167 aaKnown RBP6.74□□□□□ -1.33
USP28-205ENST00000537706 ATG5Q9H1Y0 275 aa6.74□□□□□ -1.33
USP28-205ENST00000537706 MED28Q9H204 178 aa6.74□□□□□ -1.33
USP28-205ENST00000537706 COA4Q9NYJ1 87 aa6.74□□□□□ -1.33
USP28-205ENST00000537706 GAB2Q9UQC2 676 aa6.74□□□□□ -1.33
USP28-205ENST00000537706 TRAV18A0A075B6X5 111 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 TRAV24A0A0B4J272 114 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 IGKV1-12A0A0C4DH73 117 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 C15orf65H3BRN8 121 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 FCN1O00602 326 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 RGS13O14921 159 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 IGKV1D-12P01611 117 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 PTHLHP12272 177 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 CBLN1P23435 193 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 PRSS3P35030 304 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 MRPS15P82914 257 aaKnown RBP6.73□□□□□ -1.33
USP28-205ENST00000537706 CT45A1Q5HYN5 189 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 ZNF439Q8NDP4 499 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 OR10V1Q8NGI7 309 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 OR13C9Q8NGT0 318 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 CT45A3Q8NHU0 189 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 GPX8Q8TED1 209 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 RNF5Q99942 180 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 CSTL1Q9H114 145 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 MAP6D1Q9H9H5 199 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 METTL1Q9UBP6 276 aaKnown RBP6.73□□□□□ -1.33
USP28-205ENST00000537706 RAB22AQ9UL26 194 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 ING4Q9UNL4 249 aa6.73□□□□□ -1.33
USP28-205ENST00000537706 BMPR1BO00238 502 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 ATP6V1G1O75348 118 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 NDUFB6O95139 128 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 AKAIN1P0CW23 69 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 TMEM225BP0DP42 221 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 HLA-DMBP28068 263 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 QRFPP83859 136 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 TNP2Q05952 138 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 ATP5G2Q06055 141 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 EXOSC2Q13868 293 aaKnown RBP6.72□□□□□ -1.33
USP28-205ENST00000537706 C6orf183Q5T699 404 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 OR4A47Q6IF82 309 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 UTS2BQ765I0 119 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 LINC00596Q86U02 117 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 ADAD2Q8NCV1 583 aaKnown RBP6.72□□□□□ -1.33
USP28-205ENST00000537706 OR5D18Q8NGL1 313 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 OR4C16Q8NGL9 310 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 DPCDQ9BVM2 203 aaPredicted RBP6.72□□□□□ -1.33
USP28-205ENST00000537706 UBQLN2Q9UHD9 624 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 METTL21EPA6NDL7 271 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 FAM223BA6NKX1 122 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 GGCTO75223 188 aaKnown RBP6.72□□□□□ -1.33
USP28-205ENST00000537706 ANXA3P12429 323 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 MC5RP33032 325 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 ZNF93P35789 620 aaPredicted RBP6.72□□□□□ -1.33
USP28-205ENST00000537706 OR3A3P47888 321 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 UNC119Q13432 240 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 FCN2Q15485 313 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 FAM106AQ4KMX7 169 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 AWAT2Q6E213 333 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 FAM223AQ8IWN6 122 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 NEK7Q8TDX7 302 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 CCDC107Q8WV48 283 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 FAM46BQ96A09 425 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 TSNAXQ99598 290 aaKnown RBP6.72□□□□□ -1.33
USP28-205ENST00000537706 ABHD14AQ9BUJ0 271 aa6.72□□□□□ -1.33
USP28-205ENST00000537706 PARP12Q9H0J9 701 aaKnown RBP6.72□□□□□ -1.33
USP28-205ENST00000537706 RCC2Q9P258 522 aaKnown RBP6.72□□□□□ -1.33
USP28-205ENST00000537706 TMEM14DPA8MWL7 114 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 H7C2Y5 167 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 DEFB4AO15263 64 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 SPDEFO95238 335 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 UBBP0CG47 229 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 SULT1A3P0DMM9 295 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 SULT1A4P0DMN0 295 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 TAS2R19P59542 299 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 IFITM2Q01629 132 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 CDK10Q15131 360 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 Q5VSD8 79 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 FAAP20Q6NZ36 180 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 TRAT1Q6PIZ9 186 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 SPATA12Q7Z6I5 190 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 TMEM229BQ8NBD8 167 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 UXS1Q8NBZ7 420 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 OR11H7Q8NGC8 314 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 ZFAND1Q8TCF1 268 aa6.71□□□□□ -1.34
USP28-205ENST00000537706 CPNE2Q96FN4 548 aaPredicted RBP6.71□□□□□ -1.34
USP28-205ENST00000537706 SPAG8Q99932 426 aaPredicted RBP6.71□□□□□ -1.34
USP28-205ENST00000537706 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.7□□□□□ -1.34
USP28-205ENST00000537706 OR5H14A6NHG9 310 aa6.7□□□□□ -1.34
USP28-205ENST00000537706 RAB27BO00194 218 aa6.7□□□□□ -1.34
USP28-205ENST00000537706 IL5P05113 134 aa6.7□□□□□ -1.34
USP28-205ENST00000537706 GTF2F2P13984 249 aa6.7□□□□□ -1.34
USP28-205ENST00000537706 RCVRNP35243 200 aa6.7□□□□□ -1.34
USP28-205ENST00000537706 ZNF134P52741 427 aa6.7□□□□□ -1.34
USP28-205ENST00000537706 OR10K2Q6IF99 312 aa6.7□□□□□ -1.34
USP28-205ENST00000537706 FAM71F2Q6NXP2 309 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms