RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 DPPA5A6NC42 116 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 M0QYG6 137 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 TPPPO94811 219 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 CTRB1P17538 263 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 PSMB6P28072 239 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 LPAR6P43657 344 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 SYNJ2BPP57105 145 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 OR2B8PP59922 312 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 CD69Q07108 199 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 ZNF585BQ52M93 769 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 PHLDA2Q53GA4 152 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 VAX1Q5SQQ9 334 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 CTRB2Q6GPI1 263 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 IL34Q6ZMJ4 242 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 HAPLN4Q86UW8 402 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 OR6Q1Q8NGQ2 317 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 FCAMRQ8WWV6 532 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 FANCD2OSQ96PS1 177 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 RSRP1Q9BUV0 290 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 ELOVL1Q9BW60 279 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 MTFP1Q9UDX5 166 aa11.31□□□□□ -0.6
USP28-204ENST00000537642 HUWE1Q7Z6Z7 4374 aaKnown RBP11.31□□□□□ -0.6
USP28-204ENST00000537642 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.3□□□□□ -0.6
USP28-204ENST00000537642 MARCH11A6NNE9 402 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 BMPR1BO00238 502 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 CTDSP2O14595 271 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 REG1AP05451 166 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 FGF2P09038 288 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 UCP3P55916 312 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 RPEL1Q2QD12 228 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 KLK9Q2XQG4 91 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 C15orf32Q32M92 178 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 C11orf87Q6NUJ2 197 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 LPCAT3Q6P1A2 487 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 LAX1Q8IWV1 398 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 OR9G4Q8NGQ1 327 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 RAB2BQ8WUD1 216 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 FBXL7Q9UJT9 491 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 KLK9Q9UKQ9 250 aa11.3□□□□□ -0.6
USP28-204ENST00000537642 IGLC7A0M8Q6 106 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 RGS5O15539 181 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 NDUFB8O95169 186 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 IGLV1-51P01701 117 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 CD3DP04234 171 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 GP9P14770 177 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 TMBIM6P55061 237 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 ERVK-16P61578 105 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 TBC1D26Q86UD7 250 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 SLC38A6Q8IZM9 456 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 DYNC2LI1Q8TCX1 351 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 BCL7BQ9BQE9 202 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 COMMD5Q9GZQ3 224 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 DMRT1Q9Y5R6 373 aa11.29□□□□□ -0.6
USP28-204ENST00000537642 KRASP01116 189 aa11.28□□□□□ -0.6
USP28-204ENST00000537642 G6PCP35575 357 aa11.28□□□□□ -0.6
USP28-204ENST00000537642 RPL5P46777 297 aaKnown RBP11.28□□□□□ -0.6
USP28-204ENST00000537642 RNASE10Q5GAN6 216 aaKnown RBP11.28□□□□□ -0.6
USP28-204ENST00000537642 LHFPL1Q86WI0 220 aa11.28□□□□□ -0.6
USP28-204ENST00000537642 CADM3Q8N126 398 aa11.28□□□□□ -0.6
USP28-204ENST00000537642 OR10W1Q8NGF6 305 aa11.28□□□□□ -0.6
USP28-204ENST00000537642 C15orf40Q8WUR7 153 aa11.28□□□□□ -0.6
USP28-204ENST00000537642 SRSF8Q9BRL6 282 aaKnown RBP11.28□□□□□ -0.6
USP28-204ENST00000537642 QTRT1Q9BXR0 403 aaKnown RBP11.28□□□□□ -0.6
USP28-204ENST00000537642 FAM212BQ9NTI7 297 aaPredicted RBP11.28□□□□□ -0.6
USP28-204ENST00000537642 CCDC59Q9P031 241 aaKnown RBP11.28□□□□□ -0.6
USP28-204ENST00000537642 NSG2Q9Y328 171 aa11.28□□□□□ -0.6
USP28-204ENST00000537642 IGLV11-55A0A075B6I3 123 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 TEX50A0A1B0GTY4 177 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 PPP5D1E7EU14 171 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 DHFRP00374 187 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 IGHV3-23P01764 117 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 IFNA6P05013 189 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 CSN3P07498 182 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 TBPP20226 339 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 S100GP29377 79 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 TATDN3Q17R31 274 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 TMEM229BQ8NBD8 167 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 OR4D10Q8NGI6 311 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 CCDC140Q96MF4 163 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 SMAD5-AS1Q9Y6J3 95 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 S4R3C0 116 aa11.27□□□□□ -0.61
USP28-204ENST00000537642 H3BMQ9 156 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 GABARAPH6UMI1 98 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 IGKV1-39P01597 117 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 CD74P04233 296 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 IGKV1D-39P04432 117 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 TRAPPC2P0DI81 140 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 TRAPPC2BP0DI82 140 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 DEFA4P12838 97 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 HIST1H1BP16401 226 aaKnown RBP11.26□□□□□ -0.61
USP28-204ENST00000537642 FAM209BQ5JX69 171 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 ARRDC1Q8N5I2 433 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 OR1L8Q8NGR8 309 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 NDUFA4L2Q9NRX3 87 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 SIGLEC8Q9NYZ4 499 aa11.26□□□□□ -0.61
USP28-204ENST00000537642 MFSD2BA6NFX1 497 aa11.25□□□□□ -0.61
USP28-204ENST00000537642 DBX1A6NMT0 343 aa11.25□□□□□ -0.61
USP28-204ENST00000537642 SNAPC5O75971 98 aa11.25□□□□□ -0.61
USP28-204ENST00000537642 HLA-AP01891 365 aaKnown RBP11.25□□□□□ -0.61
USP28-204ENST00000537642 PGAM2P15259 253 aa11.25□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms