RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 EGR1P18146 543 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 TPRX1Q8N7U7 411 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 KLHDC3Q9BQ90 382 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 NAA38Q9BRA0 125 aaKnown RBP11.36□□□□□ -0.59
USP40-208ENST00000450966 SSBP3Q9BWW4 388 aaPredicted RBP11.36□□□□□ -0.59
USP40-208ENST00000450966 TRAV1-1A0A0B4J248 108 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 PSMB11A5LHX3 300 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 IFNL4K9M1U5 179 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 CCL21O00585 134 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 FCN3O75636 299 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 IGLC2P0DOY2 106 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 IGLC3P0DOY3 106 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 GPR6P46095 362 aaPredicted RBP11.36□□□□□ -0.59
USP40-208ENST00000450966 FHL5Q5TD97 284 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 MIC13Q5XKP0 118 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 OSTCQ9NRP0 149 aa11.36□□□□□ -0.59
USP40-208ENST00000450966 PATE3B3GLJ2 98 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 UPK3AO75631 287 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 ZNF32P17041 273 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 SAP25Q8TEE9 199 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 CXXC4Q9H2H0 198 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 A0A087X0K7 114 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 SPANXN1Q5VSR9 72 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 TMEM101Q96IK0 257 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 MRPL27Q9P0M9 148 aaKnown RBP11.35□□□□□ -0.59
USP40-208ENST00000450966 TRAV2A0A0B4J234 112 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 A0A0U1RQV5 110 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 TNFRSF6BO95407 300 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 PPBPP02775 128 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 PRELID3AQ96N28 172 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 MRPL32Q9BYC8 188 aaKnown RBP11.35□□□□□ -0.59
USP40-208ENST00000450966 IL36GQ9NZH8 169 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 DLEC1Q9Y238 1755 aa11.35□□□□□ -0.59
USP40-208ENST00000450966 IGHV2-70DA0A0C4DH43 119 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 A0A1W2PQM1 296 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 MS4A18H0YCH9 400 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 GPX1P07203 203 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 MS4A18Q3C1V0 323 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 LINC01559Q495D7 138 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 BCL6BQ8N143 479 aaPredicted RBP11.34□□□□□ -0.59
USP40-208ENST00000450966 RASL10BQ96S79 203 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 RAXQ9Y2V3 346 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 AHRRA9YTQ3 701 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 H0YIZ8 118 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 LYZL6O75951 148 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 FCGR2BP31994 310 aaPredicted RBP11.34□□□□□ -0.59
USP40-208ENST00000450966 TMEM155Q4W5P6 130 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 ZNF793Q6ZN11 406 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 AGMATQ9BSE5 352 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 CACNA1CQ13936 2221 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 C16orf97H3BN30 126 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 TGFAP01135 160 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 VN1R4Q7Z5H5 301 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 IFI6P09912 130 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 PTPRZ1P23471 2315 aaPredicted RBP11.34□□□□□ -0.59
USP40-208ENST00000450966 CCL25O15444 150 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 COX7A1P24310 79 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 FOXC2Q99958 501 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 MPC1Q9Y5U8 109 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 ARFGEF1Q9Y6D6 1849 aa11.34□□□□□ -0.59
USP40-208ENST00000450966 CELA2BP08218 269 aaPredicted RBP11.33□□□□□ -0.6
USP40-208ENST00000450966 MGPP08493 103 aa11.33□□□□□ -0.6
USP40-208ENST00000450966 SRSF12Q8WXF0 261 aaKnown RBP11.33□□□□□ -0.6
USP40-208ENST00000450966 SPXQ9BT56 116 aa11.33□□□□□ -0.6
USP40-208ENST00000450966 FZR1Q9UM11 496 aa11.33□□□□□ -0.6
USP40-208ENST00000450966 PGLYRP1O75594 196 aaPredicted RBP11.33□□□□□ -0.6
USP40-208ENST00000450966 UCP2P55851 309 aa11.33□□□□□ -0.6
USP40-208ENST00000450966 EPDR1Q9UM22 224 aa11.33□□□□□ -0.6
USP40-208ENST00000450966 NTN1O95631 604 aa11.33□□□□□ -0.6
USP40-208ENST00000450966 RSPO4Q2I0M5 234 aaPredicted RBP11.33□□□□□ -0.6
USP40-208ENST00000450966 INO80CQ6PI98 192 aaPredicted RBP11.33□□□□□ -0.6
USP40-208ENST00000450966 RASL11AQ6T310 242 aa11.33□□□□□ -0.6
USP40-208ENST00000450966 PGPA6NDG6 321 aa11.33□□□□□ -0.6
USP40-208ENST00000450966 Q6AWC8 147 aa11.33□□□□□ -0.6
USP40-208ENST00000450966 PPDPFLQ8WWR9 84 aa11.33□□□□□ -0.6
USP40-208ENST00000450966 CCL20P78556 96 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 ATG4DQ86TL0 474 aaPredicted RBP11.32□□□□□ -0.6
USP40-208ENST00000450966 OR4A5Q8NH83 315 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 SMPXQ9UHP9 88 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 ATAD5Q96QE3 1844 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 SCO2A0A1W2PP80 73 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 GCSAMLQ5JQS6 135 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 OR5AN1Q8NGI8 311 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 PLPPR2Q96GM1 343 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 DPM2O94777 84 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 MNX1P50219 401 aaPredicted RBP11.32□□□□□ -0.6
USP40-208ENST00000450966 EPOPA6NHQ4 379 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 CD160O95971 181 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 SFTPA2Q8IWL1 248 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 SFTPA1Q8IWL2 248 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 NPCDR1Q9BY65 106 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 HBDP02042 147 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 RFESDQ8TAC1 157 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 RTBDNQ9BSG5 229 aaPredicted RBP11.32□□□□□ -0.6
USP40-208ENST00000450966 C1orf43Q9BWL3 253 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 GGTLC1Q9BX51 225 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 FSCN3Q9NQT6 498 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 HIGD1AQ9Y241 93 aa11.32□□□□□ -0.6
USP40-208ENST00000450966 A0A1B0GUT8 65 aa11.31□□□□□ -0.6
USP40-208ENST00000450966 DEFB108AA8MXU0 73 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms