RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ZFP92A6NM28 416 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 C15orf62A8K5M9 175 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 PROP1O75360 226 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 S100A6P06703 90 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 CD55P08174 381 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 OR9G9P0C7N8 305 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 IRF2P14316 349 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 RAB11AP62491 216 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 LTC4SQ16873 150 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 C17orf58Q2M2W7 97 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 TMEM249Q2WGJ8 235 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 ACOT6Q3I5F7 207 aaPredicted RBP12.16□□□□□ -0.46
USP4-203ENST00000415188 KRTAP21-3Q3LHN1 58 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 TEX36Q5VZQ5 186 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 VHLLQ6RSH7 139 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 HEPN1Q6WQI6 88 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 FAM24BQ8N5W8 94 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 ZNRF1Q8ND25 227 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 IGFBPL1Q8WX77 278 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 DDB2Q92466 427 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 ZDHHC16Q969W1 377 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 NPCDR1Q9BY65 106 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 GCM1Q9NP62 436 aa12.16□□□□□ -0.46
USP4-203ENST00000415188 TMEM250H0YL14 139 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 TGOLN2O43493 480 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 AKR1D1P51857 326 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 CEBPGP53567 150 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 SPRNQ5BIV9 151 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 FFAR4Q5NUL3 377 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 ACSM6Q6P461 480 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 ZNF788Q6ZQV5 615 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 SSX7Q7RTT5 188 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 ZFP82Q8N141 532 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 RPP25LQ8N5L8 163 aaKnown RBP12.15□□□□□ -0.46
USP4-203ENST00000415188 OR10A7Q8NGE5 316 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 OR10G9Q8NGN4 311 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 OR10G7Q8NGN6 311 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 GAFA1Q96PS6 74 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 TMEM204Q9BSN7 226 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 IDI2-AS1Q9NZ38 188 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 METTL1Q9UBP6 276 aaKnown RBP12.15□□□□□ -0.46
USP4-203ENST00000415188 WDR83OSQ9Y284 106 aa12.15□□□□□ -0.46
USP4-203ENST00000415188 hCG_1809904A0A1W2PP81 198 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 A0A1W2PR64 198 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 A0A1W2PRV1 198 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 C5orf52A6NGY3 159 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 NKX6-3A6NJ46 265 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 UBE2CO00762 179 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 CYB5BO43169 146 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 S100A8P05109 93 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 FBP1P09467 338 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 TNFRSF1AP19438 455 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 VDAC2P45880 294 aaPredicted RBP12.14□□□□□ -0.47
USP4-203ENST00000415188 PSMB3P49720 205 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 OR2B8PP59922 312 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 RELBQ01201 579 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 POU2AF1Q16633 256 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 C2CD4CQ8TF44 421 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 CTDSP1Q9GZU7 261 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 KCNIP2Q9NS61 270 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 SEC14L6B5MCN3 397 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 SMAD7O15105 426 aaKnown RBP12.14□□□□□ -0.47
USP4-203ENST00000415188 IGKV1D-33P01593 117 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 IGKV1-33P01594 117 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 RPL35P42766 123 aaKnown RBP12.14□□□□□ -0.47
USP4-203ENST00000415188 FGF8P55075 233 aaPredicted RBP12.14□□□□□ -0.47
USP4-203ENST00000415188 MEF2BQ02080 365 aaPredicted RBP12.14□□□□□ -0.47
USP4-203ENST00000415188 RPL39P5Q59GN2 51 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 PRSS57Q6UWY2 283 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 ZNF439Q8NDP4 499 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 TCEAL7Q9BRU2 100 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 SDF2L1Q9HCN8 221 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 TMEM140Q9NV12 185 aa12.14□□□□□ -0.47
USP4-203ENST00000415188 SMCO3A2RU48 225 aa12.13□□□□□ -0.47
USP4-203ENST00000415188 LY6G6DO95868 133 aa12.13□□□□□ -0.47
USP4-203ENST00000415188 CYB5R3P00387 301 aaPredicted RBP12.13□□□□□ -0.47
USP4-203ENST00000415188 CD1BP29016 333 aa12.13□□□□□ -0.47
USP4-203ENST00000415188 RND2P52198 227 aa12.13□□□□□ -0.47
USP4-203ENST00000415188 ZNF134P52741 427 aa12.13□□□□□ -0.47
USP4-203ENST00000415188 CT45A1Q5HYN5 189 aa12.13□□□□□ -0.47
USP4-203ENST00000415188 CT45A3Q8NHU0 189 aa12.13□□□□□ -0.47
USP4-203ENST00000415188 NEUROG1Q92886 237 aa12.13□□□□□ -0.47
USP4-203ENST00000415188 RAB1CQ92928 201 aa12.13□□□□□ -0.47
USP4-203ENST00000415188 NAT8Q9UHE5 227 aa12.13□□□□□ -0.47
USP4-203ENST00000415188 FOXA2Q9Y261 457 aaPredicted RBP12.13□□□□□ -0.47
USP4-203ENST00000415188 hADV38S2A0JD32 116 aa12.12□□□□□ -0.47
USP4-203ENST00000415188 ZNF98A6NK75 572 aa12.12□□□□□ -0.47
USP4-203ENST00000415188 C15orf61A6NNL5 157 aa12.12□□□□□ -0.47
USP4-203ENST00000415188 VSTM5A8MXK1 200 aa12.12□□□□□ -0.47
USP4-203ENST00000415188 HRASP01112 189 aa12.12□□□□□ -0.47
USP4-203ENST00000415188 SNRPEP62304 92 aaKnown RBP12.12□□□□□ -0.47
USP4-203ENST00000415188 MRPS11P82912 194 aaKnown RBP12.12□□□□□ -0.47
USP4-203ENST00000415188 MEF2CQ06413 473 aaPredicted RBP12.12□□□□□ -0.47
USP4-203ENST00000415188 NCMAPQ5T1S8 102 aa12.12□□□□□ -0.47
USP4-203ENST00000415188 ADAM5Q6NVV9 412 aa12.12□□□□□ -0.47
USP4-203ENST00000415188 CYP2G1PQ6ZSU1 146 aa12.12□□□□□ -0.47
USP4-203ENST00000415188 OR13D1Q8NGV5 346 aa12.12□□□□□ -0.47
USP4-203ENST00000415188 SLC25A22Q9H936 323 aa12.12□□□□□ -0.47
USP4-203ENST00000415188 HEYLQ9NQ87 328 aaPredicted RBP12.12□□□□□ -0.47
USP4-203ENST00000415188 TCF19Q9Y242 345 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 97.5 ms