RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 NXPH3O95157 252 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 CNIH1O95406 144 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 LY86O95711 162 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 OR9G9P0C7N8 305 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 SRD5A1P18405 259 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 MAS1LP35410 378 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 F2RL1P55085 397 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 GNB1P62873 340 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 SRSF4Q08170 494 aaKnown RBP11.37□□□□□ -0.59
SKA1-202ENST00000398452 TNXAQ16473 311 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 LY6EQ16553 131 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 IZUMO4Q1ZYL8 232 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 ZFP69Q49AA0 526 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 C16orf82Q7Z2V1 217 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 PPP1R27Q86WC6 154 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 NPBQ8NG41 125 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 OR4D5Q8NGN0 318 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 SSMEM1Q8WWF3 244 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 FYTTD1Q96QD9 318 aaKnown RBP11.37□□□□□ -0.59
SKA1-202ENST00000398452 SLC25A33Q9BSK2 321 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 HINT2Q9BX68 163 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 FBXL15Q9H469 300 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 TCF19Q9Y242 345 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 MOB4Q9Y3A3 225 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 OR51B2Q9Y5P1 312 aa11.37□□□□□ -0.59
SKA1-202ENST00000398452 GPR137BO60478 399 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 CRLF1O75462 422 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 OR2F2O95006 317 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 IGLV2-23P01705 113 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 HOXA1P49639 335 aaPredicted RBP11.36□□□□□ -0.59
SKA1-202ENST00000398452 SPCS3P61009 180 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 HSPE1P61604 102 aaKnown RBP11.36□□□□□ -0.59
SKA1-202ENST00000398452 RELBQ01201 579 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 RAB32Q13637 225 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 C5orf64Q2M2E5 130 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 ZNF429Q86V71 674 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 OR1L8Q8NGR8 309 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 OR5B3Q8NH48 314 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 OR52E5Q8NH55 327 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 ABHD5Q8WTS1 349 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 PPP1R14BQ96C90 147 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 ST6GAL2Q96JF0 529 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 RITA1Q96K30 269 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 RBM14Q96PK6 669 aaKnown RBP11.36□□□□□ -0.59
SKA1-202ENST00000398452 CIB3Q96Q77 187 aaPredicted RBP11.36□□□□□ -0.59
SKA1-202ENST00000398452 NEURL2Q9BR09 285 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 QTRT1Q9BXR0 403 aaKnown RBP11.36□□□□□ -0.59
SKA1-202ENST00000398452 HIPK2Q9H2X6 1198 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 FOXA2Q9Y261 457 aaPredicted RBP11.36□□□□□ -0.59
SKA1-202ENST00000398452 SIGLEC9Q9Y336 463 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 POMT1Q9Y6A1 747 aa11.36□□□□□ -0.59
SKA1-202ENST00000398452 MDFIC2A0A1B0GVS7 189 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 A0A1W2PN81 502 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 SYNGR2O43760 224 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 NDUFA3O95167 84 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 MPC2O95563 127 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 HNRNPCP07910 306 aaKnown RBP eCLIP11.35□□□□□ -0.59
SKA1-202ENST00000398452 P0C879 139 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 CNTFRP26992 372 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 CHRNA7P36544 502 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 RPL23AP62750 156 aaKnown RBP11.35□□□□□ -0.59
SKA1-202ENST00000398452 RPP30P78346 268 aaKnown RBP11.35□□□□□ -0.59
SKA1-202ENST00000398452 PRSS8Q16651 343 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 Q6YL49 198 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 Q6ZRM9 215 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 Q8N6K4 173 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 ZNF418Q8TF45 676 aaPredicted RBP11.35□□□□□ -0.59
SKA1-202ENST00000398452 ZNF430Q9H8G1 570 aaPredicted RBP11.35□□□□□ -0.59
SKA1-202ENST00000398452 PLEKHA3Q9HB20 300 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 ZC4H2Q9NQZ6 224 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 ZNF257Q9Y2Q1 563 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 SOX21Q9Y651 276 aaPredicted RBP11.35□□□□□ -0.59
SKA1-202ENST00000398452 ATRQ13535 2644 aa11.35□□□□□ -0.59
SKA1-202ENST00000398452 FXYD6-FXYD2A0A087WZ82 144 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 TRAV3A0A0B4J244 114 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 E5RGE8 158 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 FGF16O43320 207 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 SSSCA1O60232 199 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 PITX3O75364 302 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 MBPP02686 304 aaPredicted RBP11.34□□□□□ -0.59
SKA1-202ENST00000398452 IER3P46695 156 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 RPL27AP46776 148 aaKnown RBP11.34□□□□□ -0.59
SKA1-202ENST00000398452 POLR2GP62487 172 aaKnown RBP eCLIP11.34□□□□□ -0.59
SKA1-202ENST00000398452 ID3Q02535 119 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 TNFRSF9Q07011 255 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 CXorf66Q5JRM2 361 aaPredicted RBP11.34□□□□□ -0.59
SKA1-202ENST00000398452 C11orf87Q6NUJ2 197 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 PRSS54Q6PEW0 395 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 TMEM219Q86XT9 240 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 SIGLECL1Q8N7X8 197 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 INO80EQ8NBZ0 244 aaPredicted RBP11.34□□□□□ -0.59
SKA1-202ENST00000398452 DCUN1D4Q92564 292 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 RBMXL1Q96E39 390 aaKnown RBP11.34□□□□□ -0.59
SKA1-202ENST00000398452 HYLS1Q96M11 299 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 RAB40CQ96S21 281 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 MAGT1Q9H0U3 335 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 HEYLQ9NQ87 328 aaPredicted RBP11.34□□□□□ -0.59
SKA1-202ENST00000398452 TNFRSF19Q9NS68 423 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 TMEM14BQ9NUH8 114 aa11.34□□□□□ -0.59
SKA1-202ENST00000398452 HSPB7Q9UBY9 170 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms